Literature DB >> 30358041

Photoinducible Oncometabolite Detection.

Rhushikesh A Kulkarni1, Chloe A Briney1, Daniel R Crooks2, Sarah E Bergholtz1, Chandrasekhar Mushti3, Stephen J Lockett4, Andrew N Lane5, Teresa W-M Fan5, Rolf E Swenson3, W Marston Linehan2, Jordan L Meier1.   

Abstract

Dysregulated metabolism can fuel cancer by altering the production of bioenergetic building blocks and directly stimulating oncogenic gene-expression programs. However, relatively few optical methods for the direct study of metabolites in cells exist. To address this need and facilitate new approaches to cancer treatment and diagnosis, herein we report an optimized chemical approach to detect the oncometabolite fumarate. Our strategy employs diaryl tetrazoles as cell-permeable photoinducible precursors to nitrileimines. Uncaging these species in cells and cell extracts enables them to undergo 1,3-dipolar cycloadditions with endogenous dipolarophile metabolites such as fumarate to form pyrazoline cycloadducts that can be readily detected by their intrinsic fluorescence. The ability to photolytically uncage diaryl tetrazoles provides greatly improved sensitivity relative to previous methods, and enables the facile detection of dysregulated fumarate metabolism through biochemical activity assays, intracellular imaging, and flow cytometry. Our studies showcase an intersection of bioorthogonal chemistry and metabolite reactivity that can be applied for biological profiling, imaging, and diagnostics.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  bioorthogonal chemistry; cycloaddition; epigenetics; fluorescent detection; metabolism

Mesh:

Substances:

Year:  2018        PMID: 30358041      PMCID: PMC8141106          DOI: 10.1002/cbic.201800651

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  40 in total

1.  Increased risk of cancer in patients with fumarate hydratase germline mutation.

Authors:  H J Lehtonen; M Kiuru; S K Ylisaukko-Oja; R Salovaara; R Herva; P A Koivisto; O Vierimaa; K Aittomäki; E Pukkala; V Launonen; L A Aaltonen
Journal:  J Med Genet       Date:  2005-09-09       Impact factor: 6.318

2.  A photoinducible 1,3-dipolar cycloaddition reaction for rapid, selective modification of tetrazole-containing proteins.

Authors:  Wenjiao Song; Yizhong Wang; Jun Qu; Michael M Madden; Qing Lin
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

3.  Glutaric acid and its metabolites cause apoptosis in immature oligodendrocytes: a novel mechanism of white matter degeneration in glutaryl-CoA dehydrogenase deficiency.

Authors:  Bettina Gerstner; Alexander Gratopp; Monika Marcinkowski; Marco Sifringer; Michael Obladen; Christoph Bührer
Journal:  Pediatr Res       Date:  2005-03-17       Impact factor: 3.756

Review 4.  Photoinducible bioorthogonal chemistry: a spatiotemporally controllable tool to visualize and perturb proteins in live cells.

Authors:  Reyna K V Lim; Qing Lin
Journal:  Acc Chem Res       Date:  2011-05-20       Impact factor: 22.384

Review 5.  Cu-free click cycloaddition reactions in chemical biology.

Authors:  John C Jewett; Carolyn R Bertozzi
Journal:  Chem Soc Rev       Date:  2010-04       Impact factor: 54.564

6.  Modular synthesis of cell-permeating 2-ketoglutarate esters.

Authors:  Thomas T Zengeya; Rhushikesh A Kulkarni; Jordan L Meier
Journal:  Org Lett       Date:  2015-04-27       Impact factor: 6.005

7.  The nitrilimine-alkene cycloaddition is an ultra rapid click reaction.

Authors:  Xiaoshan Shayna Wang; Yan-Jiun Lee; Wenshe R Liu
Journal:  Chem Commun (Camb)       Date:  2014-02-12       Impact factor: 6.222

Review 8.  Mitochondrial-targeted fluorescent probes for reactive oxygen species.

Authors:  Bryan C Dickinson; Duangkhae Srikun; Christopher J Chang
Journal:  Curr Opin Chem Biol       Date:  2009-11-10       Impact factor: 8.822

9.  Convenient synthesis of highly functionalized pyrazolines via mild, photoactivated 1,3-dipolar cycloaddition.

Authors:  Yizhong Wang; Claudia I Rivera Vera; Qing Lin
Journal:  Org Lett       Date:  2007-09-15       Impact factor: 6.005

10.  Fumarate is an epigenetic modifier that elicits epithelial-to-mesenchymal transition.

Authors:  Marco Sciacovelli; Emanuel Gonçalves; Timothy Isaac Johnson; Vincent Roberto Zecchini; Ana Sofia Henriques da Costa; Edoardo Gaude; Alizee Vercauteren Drubbel; Sebastian Julian Theobald; Sandra Riekje Abbo; Maxine Gia Binh Tran; Vinothini Rajeeve; Simone Cardaci; Sarah Foster; Haiyang Yun; Pedro Cutillas; Anne Warren; Vincent Gnanapragasam; Eyal Gottlieb; Kristian Franze; Brian Huntly; Eamonn Richard Maher; Patrick Henry Maxwell; Julio Saez-Rodriguez; Christian Frezza
Journal:  Nature       Date:  2016-08-31       Impact factor: 49.962

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  4 in total

1.  Bioorthogonal oncometabolite ligation.

Authors:  Chloe A Briney; Susana Najera; Jordan L Meier
Journal:  Methods Enzymol       Date:  2019-03-14       Impact factor: 1.600

2.  Heterogeneous adaptation of cysteine reactivity to a covalent oncometabolite.

Authors:  Minervo Perez; Daniel W Bak; Sarah E Bergholtz; Daniel R Crooks; Bhargav Srinivas Arimilli; Youfeng Yang; Eranthie Weerapana; W Marston Linehan; Jordan L Meier
Journal:  J Biol Chem       Date:  2020-08-19       Impact factor: 5.157

3.  Bioorthogonal chemistry.

Authors:  Samuel L Scinto; Didier A Bilodeau; Robert Hincapie; Wankyu Lee; Sean S Nguyen; Minghao Xu; Christopher W Am Ende; M G Finn; Kathrin Lang; Qing Lin; John Paul Pezacki; Jennifer A Prescher; Marc S Robillard; Joseph M Fox
Journal:  Nat Rev Methods Primers       Date:  2021-04-15

Review 4.  Light-Triggered Click Chemistry.

Authors:  Gangam Srikanth Kumar; Qing Lin
Journal:  Chem Rev       Date:  2020-10-26       Impact factor: 72.087

  4 in total

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