Literature DB >> 30356213

Palladium-mediated enzyme activation suggests multiphase initiation of glycogenesis.

Maria A Gafitescu1, Takuya Machida1, Matthew K Bilyard1, Henry J Bailey2, Lluís Raich3, Javier Iglésias-Fernández3,4, Seung Seo Lee1,5, Christopher D Spicer1, Carme Rovira3,6, Wyatt W Yue7, Benjamin G Davis8.   

Abstract

Biosynthesis of glycogen, the essential glucose (and hence energy) storage molecule in humans, animals and fungi1, is initiated by the glycosyltransferase enzyme, glycogenin (GYG). Deficiencies in glycogen formation cause neurodegenerative and metabolic disease2-4, and mouse knockout5 and inherited human mutations6 of GYG impair glycogen synthesis. GYG acts as a 'seed core' for the formation of the glycogen particle by catalysing its own stepwise autoglucosylation to form a covalently bound gluco-oligosaccharide chain at initiation site Tyr 195. Precise mechanistic studies have so far been prevented by an inability to access homogeneous glycoforms of this protein, which unusually acts as both catalyst and substrate. Here we show that unprecedented direct access to different, homogeneously glucosylated states of GYG can be accomplished through a palladium-mediated enzyme activation 'shunt' process using on-protein C-C bond formation. Careful mimicry of GYG intermediates recapitulates catalytic activity at distinct stages, which in turn allows discovery of triphasic kinetics and substrate plasticity in GYG's use of sugar substrates. This reveals a tolerant but 'proof-read' mechanism that underlies the precision of this metabolic process. The present demonstration of direct, chemically controlled access to intermediate states of active enzymes suggests that such ligation-dependent activation could be a powerful tool in the study of mechanism.

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Year:  2018        PMID: 30356213     DOI: 10.1038/s41586-018-0644-7

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  10 in total

1.  Protein-Protein Cross-Coupling via Palladium-Protein Oxidative Addition Complexes from Cysteine Residues.

Authors:  Heemal H Dhanjee; Azin Saebi; Ivan Buslov; Alexander R Loftis; Stephen L Buchwald; Bradley L Pentelute
Journal:  J Am Chem Soc       Date:  2020-05-11       Impact factor: 15.419

2.  Palladium-Protein Oxidative Addition Complexes by Amine-Selective Acylation.

Authors:  Heemal H Dhanjee; Ivan Buslov; Ian W Windsor; Ronald T Raines; Bradley L Pentelute; Stephen L Buchwald
Journal:  J Am Chem Soc       Date:  2020-12-15       Impact factor: 15.419

3.  A terminal α3-galactose modification regulates an E3 ubiquitin ligase subunit in Toxoplasma gondii.

Authors:  Msano Mandalasi; Hyun W Kim; David Thieker; M Osman Sheikh; Elisabet Gas-Pascual; Kazi Rahman; Peng Zhao; Nitin G Daniel; Hanke van der Wel; H Travis Ichikawa; John N Glushka; Lance Wells; Robert J Woods; Zachary A Wood; Christopher M West
Journal:  J Biol Chem       Date:  2020-05-15       Impact factor: 5.157

4.  Oligonucleotide Bioconjugation with Bifunctional Palladium Reagents.

Authors:  Muhammad Jbara; Jacob Rodriguez; Heemal H Dhanjee; Andrei Loas; Stephen L Buchwald; Bradley L Pentelute
Journal:  Angew Chem Int Ed Engl       Date:  2021-04-16       Impact factor: 15.336

5.  Concepts of Catalysis in Site-Selective Protein Modifications.

Authors:  Patrick G Isenegger; Benjamin G Davis
Journal:  J Am Chem Soc       Date:  2019-04-25       Impact factor: 15.419

6.  High-Throughput Peptide Derivatization toward Supramolecular Diversification in Microtiter Plates.

Authors:  Yiyang Lin; Matthew Penna; Christopher D Spicer; Stuart G Higgins; Amy Gelmi; Nayoung Kim; Shih-Ting Wang; Jonathan P Wojciechowski; E Thomas Pashuck; Irene Yarovsky; Molly M Stevens
Journal:  ACS Nano       Date:  2021-02-15       Impact factor: 15.881

7.  Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.

Authors:  Mariana A B Morais; Joan Coines; Mariane N Domingues; Renan A S Pirolla; Celisa C C Tonoli; Camila R Santos; Jessica B L Correa; Fabio C Gozzo; Carme Rovira; Mario T Murakami
Journal:  Nat Commun       Date:  2021-01-14       Impact factor: 14.919

Review 8.  Computer Simulation to Rationalize "Rational" Engineering of Glycoside Hydrolases and Glycosyltransferases.

Authors:  Joan Coines; Irene Cuxart; David Teze; Carme Rovira
Journal:  J Phys Chem B       Date:  2022-01-24       Impact factor: 2.991

9.  Enzymatic Hydrolysis of Human Milk Oligosaccharides. The Molecular Mechanism of Bifidobacterium Bifidum Lacto-N-biosidase.

Authors:  Irene Cuxart; Joan Coines; Oriol Esquivias; Magda Faijes; Antoni Planas; Xevi Biarnés; Carme Rovira
Journal:  ACS Catal       Date:  2022-04-06       Impact factor: 13.700

10.  Multiplexed CuAAC Suzuki-Miyaura Labeling for Tandem Activity-Based Chemoproteomic Profiling.

Authors:  Jian Cao; Lisa M Boatner; Heta S Desai; Nikolas R Burton; Ernest Armenta; Neil J Chan; José O Castellón; Keriann M Backus
Journal:  Anal Chem       Date:  2021-01-20       Impact factor: 6.986

  10 in total

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