Literature DB >> 30351027

Evidence for Cross Species Extrapolation of Mammalian-Based High-Throughput Screening Assay Results.

Carlie A LaLone1, Daniel L Villeneuve1, Jon A Doering2, Brett R Blackwell1, Thomas R Transue3, Cody W Simmons3, Joe Swintek4, Sigmund J Degitz1, Antony J Williams5, Gerald T Ankley1.   

Abstract

High-throughput screening (HTS) and computational technologies have emerged as important tools for chemical hazard identification. The US Environmental Protection Agency (EPA) launched the Toxicity ForeCaster (ToxCast) Program, which has screened thousands of chemicals in hundreds of mammalian-based HTS assays for biological activity. The data are being used to prioritize toxicity testing on those chemicals likely to lead to adverse effects. To use HTS assays in predicting hazard to both humans and wildlife, it is necessary to understand how broadly these data may be extrapolated across species. The US EPA Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS; https://seqapass.epa.gov/seqapass/ ) tool was used to assess conservation of the 484 protein targets represented in the suite of ToxCast assays and other HTS assays. To demonstrate the utility of the SeqAPASS data for guiding extrapolation, case studies were developed which focused on targets of interest to the US Endocrine Disruptor Screening Program and the Organisation for Economic Cooperation and Development. These case studies provide a line of evidence for conservation of endocrine targets across vertebrate species, with few exceptions, and demonstrate the utility of SeqAPASS for defining the taxonomic domain of applicability for HTS results and identifying organisms for suitable follow-up toxicity tests.

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Year:  2018        PMID: 30351027      PMCID: PMC8283686          DOI: 10.1021/acs.est.8b04587

Source DB:  PubMed          Journal:  Environ Sci Technol        ISSN: 0013-936X            Impact factor:   9.028


  39 in total

1.  Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions.

Authors:  J W Thornton
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

2.  Evolutionary conservation of human drug targets in organisms used for environmental risk assessments.

Authors:  Lina Gunnarsson; Alexandra Jauhiainen; Erik Kristiansson; Olle Nerman; D G Joakim Larsson
Journal:  Environ Sci Technol       Date:  2008-08-01       Impact factor: 9.028

3.  Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action.

Authors:  Carlie A Lalone; Daniel L Villeneuve; Lyle D Burgoon; Christine L Russom; Henry W Helgen; Jason P Berninger; Joseph E Tietge; Megan N Severson; Jenna E Cavallin; Gerald T Ankley
Journal:  Aquat Toxicol       Date:  2013-09-19       Impact factor: 4.964

4.  Ligand binding was acquired during evolution of nuclear receptors.

Authors:  H Escriva; R Safi; C Hänni; M C Langlois; P Saumitou-Laprade; D Stehelin; A Capron; R Pierce; V Laudet
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

5.  A mineralocorticoid-like receptor in the rainbow trout, Oncorhynchus mykiss: cloning and characterization of its steroid binding domain.

Authors:  L Colombe; A Fostier; N Bury; F Pakdel; Y Guiguen
Journal:  Steroids       Date:  2000-06       Impact factor: 2.668

6.  ToxCast Chemical Landscape: Paving the Road to 21st Century Toxicology.

Authors:  Ann M Richard; Richard S Judson; Keith A Houck; Christopher M Grulke; Patra Volarath; Inthirany Thillainadarajah; Chihae Yang; James Rathman; Matthew T Martin; John F Wambaugh; Thomas B Knudsen; Jayaram Kancherla; Kamel Mansouri; Grace Patlewicz; Antony J Williams; Stephen B Little; Kevin M Crofton; Russell S Thomas
Journal:  Chem Res Toxicol       Date:  2016-07-20       Impact factor: 3.739

7.  Screening the ToxCast Phase 1 Chemical Library for Inhibition of Deiodinase Type 1 Activity.

Authors:  Michael W Hornung; Joseph J Korte; Jennifer H Olker; Jeffrey S Denny; Carsten Knutsen; Phillip C Hartig; Mary C Cardon; Sigmund J Degitz
Journal:  Toxicol Sci       Date:  2018-04-01       Impact factor: 4.849

8.  CDD: NCBI's conserved domain database.

Authors:  Aron Marchler-Bauer; Myra K Derbyshire; Noreen R Gonzales; Shennan Lu; Farideh Chitsaz; Lewis Y Geer; Renata C Geer; Jane He; Marc Gwadz; David I Hurwitz; Christopher J Lanczycki; Fu Lu; Gabriele H Marchler; James S Song; Narmada Thanki; Zhouxi Wang; Roxanne A Yamashita; Dachuan Zhang; Chanjuan Zheng; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2014-11-20       Impact factor: 16.971

9.  Different functions for the thyroid hormone receptors TRalpha and TRbeta in the control of thyroid hormone production and post-natal development.

Authors:  K Gauthier; O Chassande; M Plateroti; J P Roux; C Legrand; B Pain; B Rousset; R Weiss; J Trouillas; J Samarut
Journal:  EMBO J       Date:  1999-02-01       Impact factor: 11.598

Review 10.  Improving the human hazard characterization of chemicals: a Tox21 update.

Authors:  Raymond R Tice; Christopher P Austin; Robert J Kavlock; John R Bucher
Journal:  Environ Health Perspect       Date:  2013-04-19       Impact factor: 9.031

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  11 in total

1.  Effect of Thyroperoxidase and Deiodinase Inhibition on Anterior Swim Bladder Inflation in the Zebrafish.

Authors:  Evelyn Stinckens; Lucia Vergauwen; Brett R Blackwell; Gerald T Ankley; Daniel L Villeneuve; Dries Knapen
Journal:  Environ Sci Technol       Date:  2020-04-29       Impact factor: 9.028

2.  Linking Mitochondrial Dysfunction to Organismal and Population Health in the Context of Environmental Pollutants: Progress and Considerations for Mitochondrial Adverse Outcome Pathways.

Authors:  David A Dreier; Danielle F Mello; Joel N Meyer; Christopher J Martyniuk
Journal:  Environ Toxicol Chem       Date:  2019-08       Impact factor: 3.742

3.  Toward an AOP Network-Based Tiered Testing Strategy for the Assessment of Thyroid Hormone Disruption.

Authors:  Dries Knapen; Evelyn Stinckens; Jenna E Cavallin; Gerald T Ankley; Henrik Holbech; Daniel L Villeneuve; Lucia Vergauwen
Journal:  Environ Sci Technol       Date:  2020-07-09       Impact factor: 9.028

4.  Potential Toxicity of Complex Mixtures in Surface Waters from a Nationwide Survey of United States Streams: Identifying in Vitro Bioactivities and Causative Chemicals.

Authors:  Brett R Blackwell; Gerald T Ankley; Paul M Bradley; Keith A Houck; Sergei S Makarov; Alexander V Medvedev; Joe Swintek; Daniel L Villeneuve
Journal:  Environ Sci Technol       Date:  2018-12-21       Impact factor: 9.028

5.  In Silico Methods for Environmental Risk Assessment: Principles, Tiered Approaches, Applications, and Future Perspectives.

Authors:  Maria Chiara Astuto; Matteo R Di Nicola; José V Tarazona; A Rortais; Yann Devos; A K Djien Liem; George E N Kass; Maria Bastaki; Reinhilde Schoonjans; Angelo Maggiore; Sandrine Charles; Aude Ratier; Christelle Lopes; Ophelia Gestin; Tobin Robinson; Antony Williams; Nynke Kramer; Edoardo Carnesecchi; Jean-Lou C M Dorne
Journal:  Methods Mol Biol       Date:  2022

6.  Simultaneous determination of a suite of endogenous steroids by LC-APPI-MS: Application to the identification of endocrine disruptors in aquatic toxicology.

Authors:  Brett R Blackwell; Gerald T Ankley
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2020-12-24       Impact factor: 3.205

7.  Conversion of Estrone to 17β-Estradiol: A Potential Confounding Factor in Assessing Risks of Environmental Estrogens to Fish.

Authors:  Mark A Tapper; Richard C Kolanczyk; Carlie A LaLone; Jeffrey S Denny; Gerald T Ankley
Journal:  Environ Toxicol Chem       Date:  2020-09-01       Impact factor: 4.218

8.  Pathway-Based Approaches for Assessing Biological Hazards of Complex Mixtures of Contaminants: A Case Study in the Maumee River.

Authors:  G T Ankley; J P Berninger; B R Blackwell; J E Cavallin; T W Collette; D R Ekman; K A Fay; D J Feifarek; K M Jensen; M D Kahl; J D Mosley; S T Poole; E C Randolph; D Rearick; A L Schroeder; J Swintek; D L Villeneuve
Journal:  Environ Toxicol Chem       Date:  2021-02-05       Impact factor: 4.218

Review 9.  Critical Review of Read-Across Potential in Testing for Endocrine-Related Effects in Vertebrate Ecological Receptors.

Authors:  Margaret E McArdle; Elaine L Freeman; Jane P Staveley; Lisa S Ortego; Katherine K Coady; Lennart Weltje; Arnd Weyers; James R Wheeler; Audrey J Bone
Journal:  Environ Toxicol Chem       Date:  2020-03-04       Impact factor: 3.742

10.  Towards Sustainable Environmental Quality: Priority Research Questions for the Australasian Region of Oceania.

Authors:  Sally Gaw; Andrew Harford; Vincent Pettigrove; Graham Sevicke-Jones; Therese Manning; James Ataria; Tom Cresswell; Katherine A Dafforn; Frederic Dl Leusch; Bradley Moggridge; Marcus Cameron; John Chapman; Gary Coates; Anne Colville; Claire Death; Kimberly Hageman; Kathryn Hassell; Molly Hoak; Jennifer Gadd; Dianne F Jolley; Ali Karami; Konstantinos Kotzakoulakis; Richard Lim; Nicole McRae; Leon Metzeling; Thomas Mooney; Jackie Myers; Andrew Pearson; Minna Saaristo; Dave Sharley; Julia Stuthe; Oliver Sutherland; Oliver Thomas; Louis Tremblay; Waitangi Wood; Alistair Ba Boxall; Murray A Rudd; Bryan W Brooks
Journal:  Integr Environ Assess Manag       Date:  2019-09-13       Impact factor: 2.992

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