| Literature DB >> 30344795 |
Bowen Li1,2, Feng Wang1, Xiang Li1, Shuai Sun1, Yuehong Shen1, Hongyu Yang1.
Abstract
OBJECTIVE: Oral squamous cell carcinoma (OSCC) is the most common cancer of the head and neck region. The circular RNA (circRNA) is known to serve an important role in the carcinogenesis of different types of cancer. However, the circRNA role of OSCC remains unclear.Entities:
Mesh:
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Year: 2018 PMID: 30344795 PMCID: PMC6174780 DOI: 10.1155/2018/7496890
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Figure 1Scatter plot illustrating the expression profile of 11,942 circRNAs between the OSCC tissue and adjacent normal tissue. The horizontal lines represent circRNAs expression in the adjacent normal tissues and vertical lines represent circRNAs expression in OSCC tissues. The red plots represent significantly upregulated circRNAs in OSCC tissues, and green plots represent significantly downregulated circRNAs in OSCC tissues. NOR: normal tissues; CAN: cancer tissues; OSCC: oral squamous cell carcinoma; circRNA: circular RNA.
16 differently expressed circRNAs in the oral squamous cell carcinoma.
| CircRNA | Fold change |
| Type | chr | Gene Symbol |
|---|---|---|---|---|---|
| Hsa_circ_0008202 | −8.00076 | 0.042153 | Exons | 1 | SPATA6 |
| Hsa_circ_0004491 | −3.73247 | 0.022494 | Exons | 2 | ORC4 |
| Hsa_circ_0008309 | 2.010811 | 0.023438 | Exons | 2 | CUL3 |
| Novel_circ_006041 | −11.0136 | 0.035522 | Exons | 2 | FANCL |
| Novel_circ_007300 | −7.53215 | 0.042153 | One_exon | 22 | MB |
| Novel_circ_007366 | −6.97964 | 0.036032 | Exons | 22 | FBLN1 |
| Novel_circ_009346 | −6.46152 | 0.042153 | Exons | 5 | EBF1 |
| Novel_circ_006206 | −5.84394 | 0.042153 | Exons | 2 | RMND5A |
| Novel_circ_008049 | −3.74847 | 0.034611 | Exons | 3 | PHC3 |
| Novel_circ_002578 | 1.872629 | 0.030545 | Antisense | 12 | KRT6C |
| Novel_circ_005748 | 1.977281 | 0.035522 | Exons | 2 | MBOAT2 |
| Novel_circ_009749 | 2.620575 | 0.036032 | Exons | 6 | PHIP |
| Novel_circ_003644 | 2.918808 | 0.049827 | Intergenic | 14 | NA |
| Novel_circ_007992 | 3.151974 | 0.036032 | Exons | 3 | RNF13 |
| Novel_circ_010219 | 3.832216 | 0.035522 | Exons | 7 | FAM126A |
| Novel_circ_003819 | 6.455806 | 0.036032 | Exons | 15 | SPPL2A |
Figure 2(a) Expression level of hsa_circ_0008309 validated by RT-qPCR in OSCC tissues (n = 45) with adjacent normal tissue (n = 45). Student's t-test (two-tailed) was performed. Data are shown as the mean ± standard deviation. (b) ROC analysis of the expression hsa_circ_0008309 in 45 paired OSCC patients. OSCC: oral squamous cell carcinoma; RT-qPCR: reverse transcription-quantitative polymerase chain reaction; NC: normal tissues; CA: cancer tissues; ROC: receiver-operating characteristic; AUC: area under curve.
Correlation between hsa_circ_0008309 expression and clinicopathological characteristics in 45 oral squamous cell carcinoma patients.
| Characteristics | Total cases ( |
|
|---|---|---|
| Sex | 0.9828 | |
| Male | 34 | |
| Female | 11 | |
| Age (years) | 0.8206 | |
| Range (median) | 29–78 (54) | |
| <60 | 29 (46.655) | |
| ≥60 | 16 (66.125) | |
| Site | 0.2198 | |
| Tongue | 25 | |
| Buccal | 8 | |
| Gingiva | 5 | |
| Floor of the mouth | 7 | |
| Clinical stage | 0.2682 | |
| 0&I + II | 19 | |
| III + IV | 26 | |
| Pathological differentiation | 0.0386∗ | |
| Well | 19 | |
| Moderately | 20 | |
| Poorly | 6 | |
| LNM | 0.3176 | |
| Yes | 17 | |
| No | 28 |
∗ P < 0.05. LNM: lymph node metastasis.
Figure 3(a) Prediction of hsa_circ_0008309 and miRNAs interactions. (b) CircRNA-miRNA-mRNA network of hsa_circ_0008309. Circ: circular; mi: micro.
Figure 4(a) RT-qPCR analysis illustrating the hsa_circ_0008309 expression levels following transfection in SCC15 and CAL27 cell lines. Hsa_circ_0008309 was significantly overexpressed compared with the negative control. A Student's t-test (two-tailed) was performed. Data are shown as the mean ± standard deviation, ∗P < 0.05. (b) Overexpression of hsa_circ_0008309 significantly downregulates the expression of miR-136-5P and miR-382-5P compared with control in SCC15 and CAL27 cell lines by RT-qPCR. One-way ANOVA with Tukey's post-hoc test was performed. Data are shown as the mean ± standard deviation, ∗P < 0.05, ∗∗P < 0.01. (c) Western blot analysis shows the ATXN1 protein level in SCC15 and CAL27 cell lines following transfection with hsa_circ_0008309 expression plasmid, miR-136-5P inhibitor plus hsa_circ_0008309 expression plasmid, miR-382-5P inhibitor plus hsa_circ_0008309 expression plasmid and a mock vector. GAPDH was used as an internal control. RT-qPCR: reverse transcription-quantitative polymerase chain reaction; ATXN1: Ataxin 1; miR: microRNA.