Literature DB >> 30339454

Active DNA Olympic Hydrogels Driven by Topoisomerase Activity.

Brad A Krajina1, Audrey Zhu1, Sarah C Heilshorn2, Andrew J Spakowitz1,2,3.   

Abstract

Biological systems are equipped with a diverse repertoire of proteins that regulate DNA topology with precision that is beyond the reach of conventional polymer chemistry. Here, we harness the unique properties of topoisomerases to synthesize Olympic hydrogels formed by topologically interlinked DNA rings. Using dynamic light scattering microrheology to probe the viscoelasticity of DNA topological networks, we show that topoisomerase II enables the facile preparation of active, adenosine triphosphate-driven Olympic hydrogels that can be switched between liquid and solid states on demand. Our results provide a versatile system for engineering switchable topological materials that may be broadly leveraged to model the impact of topological constraints and active dynamics in the physics of chromosomes and other polymeric materials.

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Year:  2018        PMID: 30339454     DOI: 10.1103/PhysRevLett.121.148001

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Equilibrium structure and deformation response of 2D kinetoplast sheets.

Authors:  Alexander R Klotz; Beatrice W Soh; Patrick S Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-06       Impact factor: 11.205

Review 2.  Conformational Freedom and Topological Confinement of Proteins in Biomolecular Condensates.

Authors:  Daniel Scholl; Ashok A Deniz
Journal:  J Mol Biol       Date:  2021-11-09       Impact factor: 5.469

3.  Dynamic light scattering microrheology for soft and living materials.

Authors:  Pamela C Cai; Brad A Krajina; Michael J Kratochvil; Lei Zou; Audrey Zhu; Elizabeth B Burgener; Paul L Bollyky; Carlos E Milla; Matthew J Webber; Andrew J Spakowitz; Sarah C Heilshorn
Journal:  Soft Matter       Date:  2021-01-11       Impact factor: 3.679

4.  Topological tuning of DNA mobility in entangled solutions of supercoiled plasmids.

Authors:  Jan Smrek; Jonathan Garamella; Rae Robertson-Anderson; Davide Michieletto
Journal:  Sci Adv       Date:  2021-05-12       Impact factor: 14.136

5.  Non-Equilibrium Living Polymers.

Authors:  Davide Michieletto
Journal:  Entropy (Basel)       Date:  2020-10-06       Impact factor: 2.524

6.  Topological Friction and Relaxation Dynamics of Spatially Confined Catenated Polymers.

Authors:  Giulia Amici; Michele Caraglio; Enzo Orlandini; Cristian Micheletti
Journal:  ACS Macro Lett       Date:  2021-12-13       Impact factor: 6.903

7.  Topological digestion drives time-varying rheology of entangled DNA fluids.

Authors:  D Michieletto; P Neill; S Weir; D Evans; N Crist; V A Martinez; R M Robertson-Anderson
Journal:  Nat Commun       Date:  2022-07-28       Impact factor: 17.694

8.  Geometric Predictors of Knotted and Linked Arcs.

Authors:  Joseph L Sleiman; Robin H Burton; Michele Caraglio; Yair Augusto Gutierrez Fosado; Davide Michieletto
Journal:  ACS Polym Au       Date:  2022-07-08

9.  Random Knotting in Fractal Ring Polymers.

Authors:  Phillip M Rauscher; Juan J de Pablo
Journal:  Macromolecules       Date:  2022-09-08       Impact factor: 6.057

  9 in total

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