Literature DB >> 30339321

A curated gene list for expanding the horizons of pigmentation biology.

Laura L Baxter1, Dawn E Watkins-Chow1, William J Pavan1, Stacie K Loftus1.   

Abstract

Over the past century, studies of human pigmentary disorders along with mouse and zebrafish models have shed light on the many cellular functions associated with visible pigment phenotypes. This has led to numerous genes annotated with the ontology term "pigmentation" in independent human, mouse, and zebrafish databases. Comparisons among these datasets revealed that each is individually incomplete in documenting all genes involved in integument-based pigmentation phenotypes. Additionally, each database contained inherent species-specific biases in data annotation, and the term "pigmentation" did not solely reflect integument pigmentation phenotypes. This review presents a comprehensive, cross-species list of 650 genes involved in pigmentation phenotypes that was compiled with extensive manual curation of genes annotated in OMIM, MGI, ZFIN, and GO. The resulting cross-species list of genes both intrinsic and extrinsic to integument pigment cells provides a valuable tool that can be used to expand our knowledge of complex, pigmentation-associated pathways. Published 2018. This article is a U.S. Government work and is in the public domain in the USA.

Entities:  

Keywords:  melanin; melanocyte; pigmentation; skin

Mesh:

Year:  2018        PMID: 30339321     DOI: 10.1111/pcmr.12743

Source DB:  PubMed          Journal:  Pigment Cell Melanoma Res        ISSN: 1755-1471            Impact factor:   4.693


  18 in total

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2.  Characterizing mobile element insertions in 5675 genomes.

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Review 3.  Evolutionary genetics of skin pigmentation in African populations.

Authors:  Yuanqing Feng; Michael A McQuillan; Sarah A Tishkoff
Journal:  Hum Mol Genet       Date:  2021-04-26       Impact factor: 6.150

Review 4.  Pharmacologic manipulation of skin pigmentation.

Authors:  Gabriel H Kindl; John A D'Orazio
Journal:  Pigment Cell Melanoma Res       Date:  2021-03-12       Impact factor: 4.159

5.  KIT is involved in melanocyte proliferation, apoptosis and melanogenesis in the Rex Rabbit.

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Journal:  PeerJ       Date:  2020-06-18       Impact factor: 2.984

6.  Thyroid hormone regulates distinct paths to maturation in pigment cell lineages.

Authors:  Lauren M Saunders; Abhishek K Mishra; Andrew J Aman; Victor M Lewis; Matthew B Toomey; Jonathan S Packer; Xiaojie Qiu; Jose L McFaline-Figueroa; Joseph C Corbo; Cole Trapnell; David M Parichy
Journal:  Elife       Date:  2019-05-29       Impact factor: 8.140

7.  Identification of Gene Variants Associated with Melanocyte Stem Cell Differentiation in Mice Predisposed for Hair Graying.

Authors:  Allison C Fialkowski; Denise J Levy; Dawn E Watkins-Chow; Joseph W Palmer; Roshan Darji; Hemant K Tiwari; William J Pavan; Melissa L Harris
Journal:  G3 (Bethesda)       Date:  2019-03-07       Impact factor: 3.154

8.  MEK inhibition remodels the active chromatin landscape and induces SOX10 genomic recruitment in BRAF(V600E) mutant melanoma cells.

Authors:  Temesgen D Fufa; Laura L Baxter; Julia C Wedel; Derek E Gildea; Stacie K Loftus; William J Pavan
Journal:  Epigenetics Chromatin       Date:  2019-08-09       Impact factor: 4.954

9.  Frameshift Variant in MFSD12 Explains the Mushroom Coat Color Dilution in Shetland Ponies.

Authors:  Jocelyn Tanaka; Tosso Leeb; James Rushton; Thomas R Famula; Maura Mack; Vidhya Jagannathan; Christine Flury; Iris Bachmann; John Eberth; Sue M McDonnell; Maria Cecilia T Penedo; Rebecca R Bellone
Journal:  Genes (Basel)       Date:  2019-10-19       Impact factor: 4.096

10.  Pooled Sequencing Analysis of Geese (Anser cygnoides) Reveals Genomic Variations Associated With Feather Color.

Authors:  Shuang Ren; Guangqi Lyu; David M Irwin; Xin Liu; Chunyu Feng; Runhong Luo; Junpeng Zhang; Yongfeng Sun; Songyang Shang; Shuyi Zhang; Zhe Wang
Journal:  Front Genet       Date:  2021-06-18       Impact factor: 4.599

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