Literature DB >> 33438000

Evolutionary genetics of skin pigmentation in African populations.

Yuanqing Feng1, Michael A McQuillan1, Sarah A Tishkoff1,2.   

Abstract

Skin color is a highly heritable human trait, and global variation in skin pigmentation has been shaped by natural selection, migration and admixture. Ethnically diverse African populations harbor extremely high levels of genetic and phenotypic diversity, and skin pigmentation varies widely across Africa. Recent genome-wide genetic studies of skin pigmentation in African populations have advanced our understanding of pigmentation biology and human evolutionary history. For example, novel roles in skin pigmentation for loci near MFSD12 and DDB1 have recently been identified in African populations. However, due to an underrepresentation of Africans in human genetic studies, there is still much to learn about the evolutionary genetics of skin pigmentation. Here, we summarize recent progress in skin pigmentation genetics in Africans and discuss the importance of including more ethnically diverse African populations in future genetic studies. In addition, we discuss methods for functional validation of adaptive variants related to skin pigmentation.
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Year:  2021        PMID: 33438000      PMCID: PMC8117430          DOI: 10.1093/hmg/ddab007

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  139 in total

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Authors:  L Minwalla; Y Zhao; I C Le Poole; R R Wickett; R E Boissy
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2.  Global landscape of recent inferred Darwinian selection for Homo sapiens.

Authors:  Eric T Wang; Greg Kodama; Pierre Baldi; Robert K Moyzis
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-21       Impact factor: 11.205

3.  HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter.

Authors:  Mijke Visser; Manfred Kayser; Robert-Jan Palstra
Journal:  Genome Res       Date:  2012-01-10       Impact factor: 9.043

4.  SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans.

Authors:  Rebecca L Lamason; Manzoor-Ali P K Mohideen; Jason R Mest; Andrew C Wong; Heather L Norton; Michele C Aros; Michael J Jurynec; Xianyun Mao; Vanessa R Humphreville; Jasper E Humbert; Soniya Sinha; Jessica L Moore; Pudur Jagadeeswaran; Wei Zhao; Gang Ning; Izabela Makalowska; Paul M McKeigue; David O'donnell; Rick Kittles; Esteban J Parra; Nancy J Mangini; David J Grunwald; Mark D Shriver; Victor A Canfield; Keith C Cheng
Journal:  Science       Date:  2005-12-16       Impact factor: 47.728

5.  Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms.

Authors:  O Lao; J M de Gruijter; K van Duijn; A Navarro; M Kayser
Journal:  Ann Hum Genet       Date:  2007-01-18       Impact factor: 1.670

6.  Geographic distribution of environmental factors influencing human skin coloration.

Authors:  George Chaplin
Journal:  Am J Phys Anthropol       Date:  2004-11       Impact factor: 2.868

7.  Interactions between HERC2, OCA2 and MC1R may influence human pigmentation phenotype.

Authors:  Wojciech Branicki; Urszula Brudnik; Anna Wojas-Pelc
Journal:  Ann Hum Genet       Date:  2009-02-04       Impact factor: 1.670

8.  Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.

Authors:  Pirro G Hysi; Ana M Valdes; Fan Liu; Nicholas A Furlotte; David M Evans; Veronique Bataille; Alessia Visconti; Gibran Hemani; George McMahon; Susan M Ring; George Davey Smith; David L Duffy; Gu Zhu; Scott D Gordon; Sarah E Medland; Bochao D Lin; Gonneke Willemsen; Jouke Jan Hottenga; Dragana Vuckovic; Giorgia Girotto; Ilaria Gandin; Cinzia Sala; Maria Pina Concas; Marco Brumat; Paolo Gasparini; Daniela Toniolo; Massimiliano Cocca; Antonietta Robino; Seyhan Yazar; Alex W Hewitt; Yan Chen; Changqing Zeng; Andre G Uitterlinden; M Arfan Ikram; Merel A Hamer; Cornelia M van Duijn; Tamar Nijsten; David A Mackey; Mario Falchi; Dorret I Boomsma; Nicholas G Martin; David A Hinds; Manfred Kayser; Timothy D Spector
Journal:  Nat Genet       Date:  2018-04-16       Impact factor: 38.330

9.  Identifying loci under positive selection in complex population histories.

Authors:  Alba Refoyo-Martínez; Rute R da Fonseca; Katrín Halldórsdóttir; Einar Árnason; Thomas Mailund; Fernando Racimo
Journal:  Genome Res       Date:  2019-07-30       Impact factor: 9.043

10.  Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes.

Authors:  Harm-Jan Westra; Marta Martínez-Bonet; Suna Onengut-Gumuscu; Annette Lee; Yang Luo; Nikola Teslovich; Jane Worthington; Javier Martin; Tom Huizinga; Lars Klareskog; Solbritt Rantapaa-Dahlqvist; Wei-Min Chen; Aaron Quinlan; John A Todd; Steve Eyre; Peter A Nigrovic; Peter K Gregersen; Stephen S Rich; Soumya Raychaudhuri
Journal:  Nat Genet       Date:  2018-09-17       Impact factor: 41.307

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  4 in total

Review 1.  Advances in integrative African genomics.

Authors:  Chao Zhang; Matthew E B Hansen; Sarah A Tishkoff
Journal:  Trends Genet       Date:  2021-11-02       Impact factor: 11.639

2.  Genetic ancestry in precision medicine is reshaping the race debate.

Authors:  Talia Krainc; Agustín Fuentes
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-16       Impact factor: 12.779

3.  Genetics of adaptation.

Authors:  Kirsten Bomblies; Catherine L Peichel
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-18       Impact factor: 12.779

Review 4.  The evolution of human skin pigmentation involved the interactions of genetic, environmental, and cultural variables.

Authors:  Nina G Jablonski
Journal:  Pigment Cell Melanoma Res       Date:  2021-05-04       Impact factor: 4.693

  4 in total

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