| Literature DB >> 30337500 |
Xiaosong Zhang1, Jilei Tang2, Nan Shen3, Kewei Ren4.
Abstract
Methionine synthase (METH, i.e., MTR) is a key enzyme in the folate pathway, which plays a critical role in the synthesis, repair, and methylation of DNA. The association between METH gene polymorphisms and prostate cancer susceptibility remains ambiguous. Thus, we performed an updated meta-analysis of METH single-nucleotide polymorphism rs1805087 involving 12 independent case-control studies comprising 9986 prostate cancer patients and 40134 controls. The odds ratio and 95% confidence intervals were applied to evaluate the relation of this single-nucleotide polymorphism with prostate cancer. Statistical analysis was performed in STATA 11.0. A significant association was found between rs1805087 and increased prostate cancer risk, overall and with Hardy-Weinberg equilibrium. In subgroup analyses (based on ethnicity, source of control, genotyping methods, or publication status), similar associations were observed (e.g., genotype GA vs. AA: odds ratio 1.19, 95% confidence interval 1.01-1.40 among whites; G allele vs. A allele: odds ratio 1.14, 95% confidence interval 1.02-1.28 among hospital-based controls). Thus, the common polymorphism (rs1805087) of METH may be associated with increased prostate cancer risk. Further studies with a larger sample size and detailed gene-environment interactions should be conducted to identify the role of METH polymorphisms in prostate cancer susceptibility.Entities:
Keywords: meta-analysis; methionine synthase; polymorphism; prostate cancer; susceptibility
Mesh:
Substances:
Year: 2018 PMID: 30337500 PMCID: PMC6224252 DOI: 10.18632/aging.101584
Source DB: PubMed Journal: Aging (Albany NY) ISSN: 1945-4589 Impact factor: 5.682
Figure 1A flowchart illustrating the search strategy used to identify studies on association of .
Basic information for included studies of the association between METH rs1805087 polymorphism sites and prostate cancer susceptibility.
| Author | Year | Country | Ethnicity | Case | Control | Status | SOC | Case | Control | HWE | Genotype | NOS | |||||
| GG | GA | AA | GG | GA | AA | ||||||||||||
| Qu | 2016 | China | Asian | 1817 | 2026 | Published | HB | 20 | 316 | 1481 | 15 | 319 | 1692 | 0.993 | SNaPshot analysis | 9 | |
| Cai | 2010 | China | Asian | 217 | 220 | Published | HB | 5 | 27 | 185 | 3 | 29 | 188 | 0.139 | PCR-RFLP | 7 | |
| Ebrahimi | 2017 | Iran | Asian | 100 | 100 | Published | HB | 13 | 53 | 34 | 6 | 37 | 57 | 0.998 | PCR-RFLP | 7 | |
| López-Cortés | 2013 | Ecuador | Caucasian | 104 | 110 | Published | PB | 3 | 9 | 92 | 1 | 5 | 104 | 0.006 | Sequencing | 9 | |
| Marchal | 2008 | Spain | Caucasian | 181 | 204 | Published | HB | 9 | 54 | 118 | 11 | 55 | 138 | 0.088 | Taqman | 7 | |
| Weiner | 2012 | Russia | Caucasian | 370 | 285 | Published | HB | 15 | 134 | 221 | 16 | 96 | 173 | 0.579 | Taqman | 7 | |
| Stevens | 2008 | USA | Caucasian | 794 | 1105 | Published | PB | 42 | 351 | 401 | 53 | 324 | 728 | 0.032 | Taqman | 9 | |
| FHS SHARe | 2008 | USA | Caucasian | 172 | 231 | Unpublished | HB | 7 | 55 | 110 | 9 | 69 | 153 | 0.728 | GeneChip | 7 | |
| CGEMS | 2008 | USA | Caucasian | 1162 | 1112 | Unpublished | PB | 48 | 376 | 738 | 38 | 340 | 734 | 0.858 | Illumina | 7 | |
| UKGPCS | 2008 | UK | Caucasian | 1850 | 1886 | Unpublished | PB | 84 | 590 | 1176 | 71 | 547 | 1268 | 0.213 | Illumina | 7 | |
| deCODE | 2008 | Iceland | Caucasian | 1619 | 30779 | Unpublished | PB | 60 | 466 | 1093 | 1044 | 9160 | 20575 | 0.532 | Sequencing | 7 | |
| ProtecT | 2008 | UK | Caucasian | 1600 | 2076 | Unpublished | PB | 52 | 515 | 1033 | 84 | 637 | 1355 | 0.402 | allele-specific PCR (KASPar) and Taqman | 7 |
HWE: Hardy–Weinberg equilibrium; HB: hospital-based; PB: population-based; PCR-FLIP: polymerase chain reaction and restrictive fragment length polymorphism, NOS: Newcastle-Ottawa Scale
Figure 2The MAF of rs1805087 according to the 1000 Genomes online database and present analysis. EAS: East Asian, EUR: European, AFR: African, AMR: American, and SAS: South Asian.
Figure 3An overall forest plot of PCa risk associated with rs1805087 (G allele vs. A allele). The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the weight (inverse of variance). The diamond represents the summary OR and 95% CI.
Total and stratified subgroup analysis for METH rs1805087 polymorphism sites and prostate cancer susceptibility.
| Variables | N | Case/ | G-allele vs. A-allele | GA vs. AA | GG vs. AA | GG+GA vs. AA | |||
| Control | OR(95%CI) | OR(95%CI) | OR(95%CI) | OR(95%CI) | |||||
| Total | 12 | 9986/40134 | 1.15(1.04-1.29)0.000 0.008 | 1.20(1.04-1.38)0.000 0.012 | 1.15(1.00-1.32)0.263 0.048 | 1.20(1.05-1.38)0.000 0.009 | |||
| With HWE | 10 | 9088/38909 | 1.08(1.00-1.17)0.074 0.040 | 1.07(1.01-1.14)0.160 0.027 | 1.11(0.96-1.29)0.252 0.154 | 1.10(1.00-1.20)0.080 0.039 | |||
| Ethnicity | |||||||||
| Asian | 3 | 2134/2346 | 1.33(0.94-1.88)0.050 0.109 | 1.31(0.84-2.05)0.044 0.233 | 1.93(1.14-3.26)0.390 0.014 | 1.38(0.87-2.20)0.024 0.174 | |||
| Caucasian | 9 | 7852/37788 | 1.12(1.00-1.27)0.000 0.052 | 1.19(1.01-1.40)0.000 0.043 | 1.10(0.95-1.28)0.462 0.181 | 1.18(1.01-1.38)0.000 0.042 | |||
| Source of Control | |||||||||
| HB | 6 | 2857/3066 | 1.14(1.02-1.28)0.144 0.017 | 1.16(1.02-1.31)0.265 0.028 | 1.28(0.89-1.82)0.232 0.181 | 1.16(1.03-1.32)0.145 0.018 | |||
| PB | 6 | 7129/37068 | 1.16(1.00-1.34)0.000 0.053 | 1.22(0.99-1.50)0.000 0.067 | 1.13(0.97-1.32)0.275 0.116 | 1.22(1.00-1.48)0.000 0.054 | |||
| Genotype methods | |||||||||
| Others | 2 | 1989/2257 | 1.14(0.99-1.31)0.747 0.069 | 1.13(0.96-1.32)0.931 0.135 | 1.37(0.79-2.40)0.582 0.265 | 1.14(0.98-1.33)0.865 0.090 | |||
| Taqman | 4 | 2945/3670 | 1.14(0.87-1.49)0.000 0.333 | 1.29(0.90-1.84)0.000 0.172 | 0.98(0.77-1.25)0.183 0.857 | 1.24(0.87-1.77)0.000 0.235 | |||
| PCR-RFLP | 2 | 317/320 | 1.49(0.81-2.74)0.058 0.202 | 1.50(0.60-3.73)0.026 0.385 | 2.78(1.19-6.50)0.404 0.018 | 1.61(0.65-3.99)0.020 0.307 | |||
| Sequencing | 4 | 4735/33887 | 1.09(0.97-1.23)0.056 0.162 | 1.05(0.97-1.13)0.101 0.240 | 1.19(0.99-1.43)0.676 0.070 | 1.09(0.95-1.25)0.061 0.217 | |||
| Publish status | |||||||||
| Published | 7 | 3583/4050 | 1.29(1.06-1.58)0.003 0.012 | 1.38(1.04-1.83)0.000 0.024 | 1.38(1.05-1.83)0.278 0.023 | 1.39(1.06-1.82)0.000 0.017 | |||
| Unpublished | 5 | 6403/36084 | 1.05(0.99-1.11)0.241 0.111 | 1.05(0.98-1.12)0.288 0.161 | 1.08(0.92-1.27)0.415 0.339 | 1.05(0.99-1.12)0.249 0.120 |
Ph: value of Q-test for heterogeneity test; P: Z-test for the statistical significance of the OR; HWE: Hardy–Weinberg equilibrium; HB: hospital-based; PB: population-based; PCR-FLIP: polymerase chain reaction and restrictive fragment length polymorphism.
Figure 4A forest plot of PCa risk associated with rs1805087 among whites (genotype GA vs. AA). The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the weight (inverse of variance). The diamond represents the summary OR and 95% CI.
Figure 5A forest plot of PCa risk associated with rs1805087 among Asians (genotype GG vs. AA). The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the weight (inverse of variance). The diamond represents the summary OR and 95% CI.
Figure 6A forest plot of PCa risk associated with rs1805087 in terms of genotype methods (GG vs. AA). The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the weight (inverse of variance). The diamond represents the summary OR and 95% CI.
Figure 7A forest plot of PCa risk associated with rs1805087 in terms of publication status (genotypes GG+GA vs. AA). The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the weight (inverse of variance). The diamond represents the summary OR and 95% CI.
Figure 8Sensitivity analysis between rs1805087 and PCa risk (G allele vs. A allele).
Publication bias tests (Begg’s funnel plot and Egger’s test for publication bias test) for METH rs1805087 polymorphism.
| Egger's test | Begg's test | |||||||
| Genetic type | Coefficient | Standard error | 95%CI of intercept | |||||
| G-allele vs. A-allele | 1.465739 | 1.059131 | 1.38 | 0.196 | 0.8941511- 3.825629 | 1.03 | 0.304 | |
| GA vs. AA | 1.174084 | 0.8164867 | 1.4 | 0.181 | 0.6451616-2.99333 | 1.17 | 0.244 | |
| GG vs. AA | 0.521603 | 0.3957242 | 1.32 | 0.217 | 0.3601251-1.403332 | 1.03 | 0.304 | |
| GG+GA vs. AA | 1.25699 | 0.8545912 | 1.47 | 0.172 | 0.6471578- 3.161138 | 1.17 | 0.244 | |
| GG vs. GA+AA | 0.524554 | 0.4058054 | 1.29 | 0.225 | 0.379637- 1.428745 | 1.03 | 0.304 |
Figure 9Begg’s funnel plot for publication bias testing in analyses involving association of rs1805087 with PCa risk. (a: G allele vs. A allele; b: genotype GA vs. AA; c: GG vs. AA; d: GG+GA vs. AA). Each point represents a separate study on the indicated association. Log [OR] stands for the natural logarithm of OR. The horizontal line indicates mean effect size. b: Egger’s publication bias plot of rs1805087 and PCa risk (e: G allele vs. A allele; f: genotype GA vs. AA; g: GG vs. AA; h: GG+GA vs. AA).