| Literature DB >> 30333969 |
Eduardo Sánchez-Lara1, Samuel Treviño2, Brenda L Sánchez-Gaytán1, Enrique Sánchez-Mora3, María Eugenia Castro1, Francisco J Meléndez-Bustamante2, Miguel A Méndez-Rojas4, Enrique González-Vergara1.
Abstract
Cytosine, a DEntities:
Keywords: 51V-NMR; X-ray crystal structure; cytosine; decavanadate; metformin; polyoxovanadates; theoretical studies; vibrational spectroscopy
Year: 2018 PMID: 30333969 PMCID: PMC6176007 DOI: 10.3389/fchem.2018.00402
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.221
Scheme 1A brief timeline of the vanadium bioinorganic chemistry, highlighting the vanadium role as an antidiabetic, and anticancer agent (Cantley et al., 1977; Thompson et al., 1984; Vilter, 1984; Orvig et al., 1995; Elberg et al., 1997; Crans, 2000; Narla et al., 2001; Rehder, 2008; Aureliano and Crans, 2009; Steens et al., 2010; Aureliano, 2017; Bijelic et al., 2018).
Scheme 2Molecular diagram of (A) Cytosinium, HCyt and (B) Metforminium, HMetf.
Single crystal data and structure refinement details for [HCyt]6[V10O28]·4H2O, 1, and [HMetf]6[V10O28]·6H2O, 2.
| Empirical formula | C24H44N18O38V10 | C24H84N30O34V10 |
| Formula weight | 1702.17 | 1846.61 |
| Crystal system | Triclinic | Triclinic |
| T (K) | 298(2) | 298(2) |
| Space group | ||
| 10.6062(6) | 11.5615(6) | |
| 12.2173(7) | 13.2793(8) | |
| c [Å] | 12.4329(7) | 13.7694(6) |
| α (deg) | 62.225(6) | 96.011(4) |
| β (deg) | 69.091(6) | 107.347(4) |
| γ (deg) | 85.817(5) | 115.557(6) |
| V (Å3) | 1323.04(16) | 1752.30(18) |
| Z | 1 | 1 |
| Radiation type | Mo | Mo |
| 2.136 | 1.824 | |
| μ(mm−1) | 1.806 | 1.37 |
| Reflections collected | 18,005 | 23,664 |
| Independent reflections | 6,464 | 8,617 |
| Parameters | 454 | 567 |
| Goodness-of-fit on | 1.03 | 1.05 |
| Final R index [ | 0.050 | 0.051 |
| Largest diff. peak and hole (e/Å3) | 0.80, −0.83 | 1.01, −0.52 |
| 0.138 | 0.163 |
Figure 1ORTEP-like view of the asymmetric unit of Compound 1, with displacement ellipsoids for non-H atoms drawn at the 50% probability level.
Hydrogen bond geometry (Å, °) for Compound 1.
| N1—H1···O9 | 0.85 (5) | 1.94 (5) | 2.777 (4) | 169 (5) | |
| N2—H2···O10 | 0.70 (5) | 1.98 (5) | 2.670 (4) | 168 (5) | – |
| N3—H31···O5 | 0.81 (5) | 2.06 (5) | 2.813 (4) | 156 (5) | |
| N3—H32···O10 | 0.81 (5) | 2.51 (5) | 3.125 (4) | 134 (4) | – |
| N3—H32···O11 | 0.81 (5) | 2.53 (5) | 3.249 (4) | 149 (5) | – |
| N11—H11···O12 | 0.74 (5) | 2.00 (5) | 2.739 (4) | 172 (5) | |
| N12—H12···O32 | 0.67 (5) | 2.01 (5) | 2.679 (5) | 174 (6) | |
| N13—H131···O21 | 0.91 (6) | 1.92 (6) | 2.818 (5) | 168 (5) | – |
| N21—H21···O31 | 0.76 (5) | 2.16 (5) | 2.911 (5) | 168 (5) | - |
| N22—H22···O11 | 0.75 (4) | 2.03 (5) | 2.722 (4) | 154 (5) | |
| N23—H231···O11 | 0.76 (5) | 2.04 (5) | 2.791 (5) | 173 (5) | - |
| N23—H232···O6 | 0.81 (5) | 1.91 (5) | 2.708 (5) | 166 (5) | - |
Figure 2Partial crystal structure of Compound 1, showing the supramolecular network, which is based on the hydrogen bonds (dashed lines) formed between HCyt and decavanadates: Orange H-bonds are used to form the C(12) chain that is connected to [V10O28]6− anions by purple H-bonds in the crystal structure. The inset displays the π-π contacts between two non-symmetry related HCyt.
Figure 3ORTEP-like view of the asymmetric unit of Compound 2, with displacement ellipsoids for non-H atoms drawn at the 50% probability level. Only the major component of disorder for one HMetf is shown.
Scheme 3Tautomeric forms (A–D) of the metforminium (HMetf) cation.
Hydrogen bond geometry (Å, °) for Compound 2.
| N10—H10 | 0.86 | 2.09 | 2.894 (5) | 155 | – |
| N11—H11A···O7 | 0.86 | 2.47 | 3.251(7) | 151 | |
| N11−H11A···O12 | 0.86 | 2.37 | 3.102(6) | 143 | |
| N15—H15B···O13 | 0.85 | 2.27 | 2.931 | 134 | |
| N20—H20A···O5 | 0.86 | 2.42 | 3.142 (5) | 142 | |
| N20—H20B···O3 | 0.86 | 2.14 | 2.932(6) | 153 | |
| N21—H21 | 0.86 | 2.12 | 2.950(5) | 162 | |
| N25—H25 | 0.86 | 2.15 | 2.808(4) | 133 | – |
| N30A—H30 | 0.86 | 2.15 | 2.95(2) | 154 | |
| N31A—H31 | 0.86 | 2.35 | 3.09(3) | 144 | |
| N35 | 0.86 | 2.13 | 2.898 (6) | 149 | |
| O(55)−H55(A)···N23 | 0.85 | 2.11(5) | 2.841(11) | 144(5) |
Figure 4Part of the crystal structure of Compound 2, showing the interaction between HMetf and [V10O28]6−. The main hydrogen bonds between the cations and anion that form the (8) and (6) rings are shown as purple dashed lines.
Figure 5Hydrogen-bond patterns in Compound 2, formed through hydrogen bonds (purple dashed lines) between two HMetf cations and two symmetry-related [V10O28]6−moities.
Figure 6Vibrational spectroscopy of Compounds 1-2 recorded in solid-state. (A) and (B) are the FT-IR and Raman spectra for Cytosine and Compound 1, while (C) and (D) are the FT-IR and Raman spectra for Metformin hydrochloride and Compound 2, respectively.
Assignments of IR and Raman abortion bands for Compounds 1-2.
| 3383 (s) | ν | 3532 (b) | ν(O-H) | ||
| 3321 (s) | ν | 3370 (s) | ν | ||
| 3135 (s) | ν | 3201(s), 3171(s) | ν | ||
| 2693 (vw) | ν(C–H) | 3171 (vs) | ν | ||
| 1718 (vs) | ν(C = O) | 2970 (vw) | ν | ||
| 1686 (vs) | ν(C = C) | 2936 (vw) | ν | ||
| 1656 (s) | ν(N = C) | 1624 (s) | ν(C = N) | ||
| 1545 (m) | ν(N = C), β(Ring) | 1569 (vs) | ν(C = N) | ||
| 1479 (vw) | (C–N) | 1509 (vw) | δ(NH) | ||
| 1231 (s) | ν(C–N), β(C–H), β(N–H) | 1477 (m) | δ(CH3) | ||
| 987 (vs), 952 (vs) | 992 (vs), | ν(V = O), γ(C–H), ν(ring), ρ(NH2) | 1418 (m) | δ(CH3) | |
| 820 (s), 737 (m) | 835 (vs) | ν | 1279 (w), 1165 (w), 1059 (w) | 1089 (w), 1048 (w) | ν(C–N) |
| 793 (vs) | ν(Ring) | 950 (vs) | 977 (vs), 952 (vs), 937 (vs) | ν(V = O), ω(N–H) | |
| 572 (s), 513 (s) | 595 (vs) | ν | 822 (vs), 735 (vs) | 833 (vs), 738 (w) | ν |
| 421 (s) | δ(VO3), γ(Ring) | 573 (w), 541 (w) | 600 (m) | ν | |
| 321 (s), | δ(V–O–V), Lattice vibrations, ω(NH2) | 325 (s), 261 (s), 245 (s) | δ(V–O–V) Lattice vibrations | ||
(s) Strong; (vs) very strong; (m) medium; (w) weak; (vw) very weak; (br) broad; (vbr) very broad.
(ν) stretching; (ν.
Figure 751V-NMR spectra in D2O of 1-2. The signals correspond to sites VA (low field), VB and VC (high field), and the oligomeric vanadium species V1, V2, and V4. The inset displays the three different vanadium sites found in decavanadate.
Figure 8Solution-phase of the optimized structure of the asymmetric unit of Compound 1, using the B97-D3 functional with the 6-31G(d) basis set for the C, H, O, N, atoms and the LanL2MB basis set for the V atoms.
Figure 9Solution-phase optimized structure of the asymmetric unit of Compound 2 using the B97-D3 functional with the 6-31G(d) basis set for the C, H, O, N, atoms and the LanL2MB basis set for V atoms.
Figure 10Isosurfaces of frontier molecular orbitals (A) HOMO and (B) LUMO, and (C) MEP of Compound 1 at B97-D3 functional with the 6-31G(d) basis set for C, H, O, N, atoms and LanL2MB basis set for V atoms in solution phase.
Figure 11Isosurfaces of frontier molecular orbitals (A) HOMO and (B) LUMO, and (C) MEP of Compound 2 at B97-D3 functional with the 6-31G(d) basis set for C, H, O, N, atoms and LanL2MB basis set for V atoms in solution phase.