Literature DB >> 30332685

Chemical hazard prediction and hypothesis testing using quantitative adverse outcome pathways.

Edward J Perkins1, Kalyan Gayen2, Jason E Shoemaker3, Philipp Antczak4, Lyle Burgoon1, Francesco Falciani4, Steve Gutsell5, Geoff Hodges5, Aude Kienzler6, Dries Knapen7, Mary McBride8, Catherine Willett9, Francis J Doyle10, Natàlia Garcia-Reyero1.   

Abstract

Current efforts in chemical safety are focused on utilizing human in vitro or alternative animal data in biological pathway context. However, it remains unclear how biological pathways, and toxicology data developed in that context, can be used to quantitatively facilitate decision-making.  The objective of this work is to determine if hypothesis testing using Adverse Outcome Pathways (AOPs) can provide quantitative chemical hazard predictions.  Current methods for predicting hazards of chemicals in a biological pathway context were extensively reviewed, specific case studies examined and computational modeling used to demonstrate quantitative hazard prediction based on an AOP. Since AOPs are chemically agnostic, we propose that AOPs function as hypotheses for how specific chemicals may cause adverse effects via specific pathways. Three broad approaches were identified for testing the hypothesis with AOPs, semi-quantitative weight of evidence, probabilistic, and mechanistic modeling. We then demonstrate how these approaches could be used to test hypotheses using high throughput in vitro data and alternative animal data. Finally, we discuss standards in development and documentation that would facilitate use in a regulatory context. We conclude that quantitative AOPs provide a flexible hypothesis framework for predicting chemical hazards. It accommodates a wide range of approaches that are useful at many stages and build upon one another to become increasingly quantitative.

Entities:  

Keywords:  quantitative adverse outcome pathways; hazard assessment; weight of evidence

Mesh:

Substances:

Year:  2018        PMID: 30332685     DOI: 10.14573/altex.1808241

Source DB:  PubMed          Journal:  ALTEX        ISSN: 1868-596X            Impact factor:   6.043


  12 in total

1.  A cross-sector call to improve carcinogenicity risk assessment through use of genomic methodologies.

Authors:  Carole L Yauk; Alison H Harrill; Heidrun Ellinger-Ziegelbauer; Jan Willem van der Laan; Jonathan Moggs; Roland Froetschl; Frank Sistare; Syril Pettit
Journal:  Regul Toxicol Pharmacol       Date:  2019-11-11       Impact factor: 3.271

2.  In silico approaches in organ toxicity hazard assessment: current status and future needs in predicting liver toxicity.

Authors:  Arianna Bassan; Vinicius M Alves; Alexander Amberg; Lennart T Anger; Scott Auerbach; Lisa Beilke; Andreas Bender; Mark T D Cronin; Kevin P Cross; Jui-Hua Hsieh; Nigel Greene; Raymond Kemper; Marlene T Kim; Moiz Mumtaz; Tobias Noeske; Manuela Pavan; Julia Pletz; Daniel P Russo; Yogesh Sabnis; Markus Schaefer; David T Szabo; Jean-Pierre Valentin; Joerg Wichard; Dominic Williams; David Woolley; Craig Zwickl; Glenn J Myatt
Journal:  Comput Toxicol       Date:  2021-09-09

3.  Converging global crises are forcing the rapid adoption of disruptive changes in drug discovery.

Authors:  J Mark Treherne; Gillian R Langley
Journal:  Drug Discov Today       Date:  2021-05-18       Impact factor: 7.851

Review 4.  Building and Applying Quantitative Adverse Outcome Pathway Models for Chemical Hazard and Risk Assessment.

Authors:  Edward J Perkins; Roman Ashauer; Lyle Burgoon; Rory Conolly; Brigitte Landesmann; Cameron Mackay; Cheryl A Murphy; Nathan Pollesch; James R Wheeler; Anze Zupanic; Stefan Scholz
Journal:  Environ Toxicol Chem       Date:  2019-08-08       Impact factor: 3.742

Review 5.  Quantitative adverse outcome pathway (qAOP) models for toxicity prediction.

Authors:  Nicoleta Spinu; Mark T D Cronin; Steven J Enoch; Judith C Madden; Andrew P Worth
Journal:  Arch Toxicol       Date:  2020-05-18       Impact factor: 5.153

6.  Stochastically modeling multiscale stationary biological processes.

Authors:  Michael A Rowland; Michael L Mayo; Edward J Perkins; Natàlia Garcia-Reyero
Journal:  PLoS One       Date:  2019-12-26       Impact factor: 3.240

Review 7.  A matter of trust: Learning lessons about causality will make qAOPs credible.

Authors:  Nicoleta Spînu; Mark T D Cronin; Judith C Madden; Andrew P Worth
Journal:  Comput Toxicol       Date:  2022-02

8.  Probabilistic modelling of developmental neurotoxicity based on a simplified adverse outcome pathway network.

Authors:  Nicoleta Spînu; Mark T D Cronin; Junpeng Lao; Anna Bal-Price; Ivana Campia; Steven J Enoch; Judith C Madden; Liadys Mora Lagares; Marjana Novič; David Pamies; Stefan Scholz; Daniel L Villeneuve; Andrew P Worth
Journal:  Comput Toxicol       Date:  2022-02

9.  Towards a qAOP framework for predictive toxicology - Linking data to decisions.

Authors:  Alicia Paini; Ivana Campia; Mark T D Cronin; David Asturiol; Lidia Ceriani; Thomas E Exner; Wang Gao; Caroline Gomes; Johannes Kruisselbrink; Marvin Martens; M E Bette Meek; David Pamies; Julia Pletz; Stefan Scholz; Andreas Schüttler; Nicoleta Spînu; Daniel L Villeneuve; Clemens Wittwehr; Andrew Worth; Mirjam Luijten
Journal:  Comput Toxicol       Date:  2022-02

10.  Integration of Adverse Outcome Pathways, Causal Networks and 'Omics to Support Chemical Hazard Assessment.

Authors:  Edward J Perkins; E Alice Woolard; Natàlia Garcia-Reyero
Journal:  Front Toxicol       Date:  2022-03-24
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