Literature DB >> 35340402

In silico approaches in organ toxicity hazard assessment: current status and future needs in predicting liver toxicity.

Arianna Bassan1, Vinicius M Alves2, Alexander Amberg3, Lennart T Anger4, Scott Auerbach2, Lisa Beilke5, Andreas Bender6,7, Mark T D Cronin8, Kevin P Cross9, Jui-Hua Hsieh2, Nigel Greene10, Raymond Kemper11, Marlene T Kim12, Moiz Mumtaz13, Tobias Noeske14, Manuela Pavan1, Julia Pletz8, Daniel P Russo15,16, Yogesh Sabnis17, Markus Schaefer3, David T Szabo18, Jean-Pierre Valentin17, Joerg Wichard19, Dominic Williams20, David Woolley21, Craig Zwickl22, Glenn J Myatt9.   

Abstract

Hepatotoxicity is one of the most frequently observed adverse effects resulting from exposure to a xenobiotic. For example, in pharmaceutical research and development it is one of the major reasons for drug withdrawals, clinical failures, and discontinuation of drug candidates. The development of faster and cheaper methods to assess hepatotoxicity that are both more sustainable and more informative is critically needed. The biological mechanisms and processes underpinning hepatotoxicity are summarized and experimental approaches to support the prediction of hepatotoxicity are described, including toxicokinetic considerations. The paper describes the increasingly important role of in silico approaches and highlights challenges to the adoption of these methods including the lack of a commonly agreed upon protocol for performing such an assessment and the need for in silico solutions that take dose into consideration. A proposed framework for the integration of in silico and experimental information is provided along with a case study describing how computational methods have been used to successfully respond to a regulatory question concerning non-genotoxic impurities in chemically synthesized pharmaceuticals.

Entities:  

Keywords:  Computational Toxicology; Expert Alerts; Hazard Identification; Hepatotoxicity; In Silico; In Silico Toxicology Protocols; Liver toxicity; Organ toxicity; QSAR; Read-across; Risk Assessment

Year:  2021        PMID: 35340402      PMCID: PMC8955833          DOI: 10.1016/j.comtox.2021.100187

Source DB:  PubMed          Journal:  Comput Toxicol        ISSN: 2468-1113


  135 in total

Review 1.  Regulatory assessment and risk management of chemical mixtures: challenges and ways forward.

Authors:  Stephanie K Bopp; Aude Kienzler; Andrea-Nicole Richarz; Sander C van der Linden; Alicia Paini; Nikolaos Parissis; Andrew P Worth
Journal:  Crit Rev Toxicol       Date:  2019-04-01       Impact factor: 5.635

Review 2.  The impact of in silico screening in the discovery of novel and safer drug candidates.

Authors:  Didier Rognan
Journal:  Pharmacol Ther       Date:  2017-02-14       Impact factor: 12.310

3.  Development of a Battery of In Silico Prediction Tools for Drug-Induced Liver Injury from the Vantage Point of Translational Safety Assessment.

Authors:  James Rathman; Chihae Yang; J Vinicius Ribeiro; Aleksandra Mostrag; Shraddha Thakkar; Weida Tong; Bryan Hobocienski; Oliver Sacher; Tomasz Magdziarz; Bruno Bienfait
Journal:  Chem Res Toxicol       Date:  2020-12-23       Impact factor: 3.739

Review 4.  Assessing safety of extractables from materials and leachables in pharmaceuticals and biologics - Current challenges and approaches.

Authors:  Thomas H Broschard; Susanne Glowienke; Uma S Bruen; Lee M Nagao; Andrew Teasdale; Cheryl L M Stults; Kim L Li; Laurie A Iciek; Greg Erexson; Elizabeth A Martin; Douglas J Ball
Journal:  Regul Toxicol Pharmacol       Date:  2016-08-26       Impact factor: 3.271

Review 5.  A practical guide to secondary pharmacology in drug discovery.

Authors:  Stephen Jenkinson; Friedemann Schmidt; Lyn Rosenbrier Ribeiro; Annie Delaunois; Jean-Pierre Valentin
Journal:  J Pharmacol Toxicol Methods       Date:  2020-04-14       Impact factor: 1.950

6.  Predicting hepatotoxicity using ToxCast in vitro bioactivity and chemical structure.

Authors:  Jie Liu; Kamel Mansouri; Richard S Judson; Matthew T Martin; Huixiao Hong; Minjun Chen; Xiaowei Xu; Russell S Thomas; Imran Shah
Journal:  Chem Res Toxicol       Date:  2015-03-09       Impact factor: 3.739

7.  Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes.

Authors:  Mark-Anthony Bray; Shantanu Singh; Han Han; Chadwick T Davis; Blake Borgeson; Cathy Hartland; Maria Kost-Alimova; Sigrun M Gustafsdottir; Christopher C Gibson; Anne E Carpenter
Journal:  Nat Protoc       Date:  2016-08-25       Impact factor: 13.491

8.  Open TG-GATEs: a large-scale toxicogenomics database.

Authors:  Yoshinobu Igarashi; Noriyuki Nakatsu; Tomoya Yamashita; Atsushi Ono; Yasuo Ohno; Tetsuro Urushidani; Hiroshi Yamada
Journal:  Nucleic Acids Res       Date:  2014-10-13       Impact factor: 16.971

Review 9.  In Silico Prediction of Organ Level Toxicity: Linking Chemistry to Adverse Effects.

Authors:  Mark T D Cronin; Steven J Enoch; Claire L Mellor; Katarzyna R Przybylak; Andrea-Nicole Richarz; Judith C Madden
Journal:  Toxicol Res       Date:  2017-07-15

10.  Mechanism Profiling of Hepatotoxicity Caused by Oxidative Stress Using Antioxidant Response Element Reporter Gene Assay Models and Big Data.

Authors:  Marlene Thai Kim; Ruili Huang; Alexander Sedykh; Wenyi Wang; Menghang Xia; Hao Zhu
Journal:  Environ Health Perspect       Date:  2015-09-18       Impact factor: 9.031

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  2 in total

1.  Current status and future directions for a neurotoxicity hazard assessment framework that integrates in silico approaches.

Authors:  Kevin M Crofton; Arianna Bassan; Mamta Behl; Yaroslav G Chushak; Ellen Fritsche; Jeffery M Gearhart; Mary Sue Marty; Moiz Mumtaz; Manuela Pavan; Patricia Ruiz; Magdalini Sachana; Rajamani Selvam; Timothy J Shafer; Lidiya Stavitskaya; David T Szabo; Steven T Szabo; Raymond R Tice; Dan Wilson; David Woolley; Glenn J Myatt
Journal:  Comput Toxicol       Date:  2022-03-17

2.  In silico approaches in organ toxicity hazard assessment: Current status and future needs for predicting heart, kidney and lung toxicities.

Authors:  Arianna Bassan; Vinicius M Alves; Alexander Amberg; Lennart T Anger; Lisa Beilke; Andreas Bender; Autumn Bernal; Mark T D Cronin; Jui-Hua Hsieh; Candice Johnson; Raymond Kemper; Moiz Mumtaz; Louise Neilson; Manuela Pavan; Amy Pointon; Julia Pletz; Patricia Ruiz; Daniel P Russo; Yogesh Sabnis; Reena Sandhu; Markus Schaefer; Lidiya Stavitskaya; David T Szabo; Jean-Pierre Valentin; David Woolley; Craig Zwickl; Glenn J Myatt
Journal:  Comput Toxicol       Date:  2021-09-13
  2 in total

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