Literature DB >> 30322979

High accuracy at low frequency: detailed behavioural classification from accelerometer data.

Jack Tatler1, Phillip Cassey2, Thomas A A Prowse3.   

Abstract

Accelerometers are a valuable tool for studying animal behaviour and physiology where direct observation is unfeasible. However, giving biological meaning to multivariate acceleration data is challenging. Here, we describe a method that reliably classifies a large number of behaviours using tri-axial accelerometer data collected at the low sampling frequency of 1 Hz, using the dingo (Canis dingo) as an example. We used out-of-sample validation to compare the predictive performance of four commonly used classification models (random forest, k-nearest neighbour, support vector machine, and naïve Bayes). We tested the importance of predictor variable selection and moving window size for the classification of each behaviour and overall model performance. Random forests produced the highest out-of-sample classification accuracy, with our best-performing model predicting 14 behaviours with a mean accuracy of 87%. We also investigated the relationship between overall dynamic body acceleration (ODBA) and the activity level of each behaviour, given the increasing use of ODBA in ecophysiology as a proxy for energy expenditure. ODBA values for our four 'high activity' behaviours were significantly greater than all other behaviours, with an overall positive trend between ODBA and intensity of movement. We show that a random forest model of relatively low complexity can mitigate some major challenges associated with establishing meaningful ecological conclusions from acceleration data. Our approach has broad applicability to free-ranging terrestrial quadrupeds of comparable size. Our use of a low sampling frequency shows potential for deploying accelerometers over extended time periods, enabling the capture of invaluable behavioural and physiological data across different ontogenies.
© 2018. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Accelerometer; Animal behaviour; Classification model; ODBA; Random forest

Mesh:

Year:  2018        PMID: 30322979     DOI: 10.1242/jeb.184085

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  6 in total

1.  Using tri-axial accelerometer loggers to identify spawning behaviours of large pelagic fish.

Authors:  Thomas M Clarke; Sasha K Whitmarsh; Jenna L Hounslow; Adrian C Gleiss; Nicholas L Payne; Charlie Huveneers
Journal:  Mov Ecol       Date:  2021-05-24       Impact factor: 3.600

2.  Accelerometer informed time-energy budgets reveal the importance of temperature to the activity of a wild, arid zone canid.

Authors:  Jack Tatler; Shannon E Currie; Phillip Cassey; Anne K Scharf; David A Roshier; Thomas A A Prowse
Journal:  Mov Ecol       Date:  2021-03-18       Impact factor: 3.600

3.  Training in the Dark: Using Target Training for Non-Invasive Application and Validation of Accelerometer Devices for an Endangered Primate (Nycticebus bengalensis).

Authors:  K Anne-Isola Nekaris; Marco Campera; Marianna Chimienti; Carly Murray; Michela Balestri; Zak Showell
Journal:  Animals (Basel)       Date:  2022-02-09       Impact factor: 2.752

4.  Tall Pinus luzmariae trees with genes from P. herrerae.

Authors:  Christian Wehenkel; Samantha Del Rocío Mariscal-Lucero; M Socorro González-Elizondo; Víctor A Aguirre-Galindo; Matthias Fladung; Carlos A López-Sánchez
Journal:  PeerJ       Date:  2020-02-26       Impact factor: 2.984

5.  Quantifying finer-scale behaviours using self-organising maps (SOMs) to link accelerometery signatures with behavioural patterns in free-roaming terrestrial animals.

Authors:  Nicole Galea; Fern Murphy; Joshua L Gaschk; David S Schoeman; Christofer J Clemente
Journal:  Sci Rep       Date:  2021-06-30       Impact factor: 4.379

6.  Strategy to Predict High and Low Frequency Behaviors Using Triaxial Accelerometers in Grazing of Beef Cattle.

Authors:  Rafael N Watanabe; Priscila A Bernardes; Eliéder P Romanzini; Larissa G Braga; Thaís R Brito; Ronyatta W Teobaldo; Ricardo A Reis; Danísio P Munari
Journal:  Animals (Basel)       Date:  2021-12-02       Impact factor: 2.752

  6 in total

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