Literature DB >> 30320156

Blind sparse inpainting reveals cytoskeletal filaments with sub-Nyquist localization.

Yanhua Wang1,2, Shu Jia3, Hao F Zhang4, Doory Kim5,6, Hazen Babcock5,6, Xiaowei Zhuang5,6,7, Leslie Ying1.   

Abstract

Single-molecule localization microscopy (SMLM), such as stochastic optical reconstruction microscopy and (fluorescence) photoactivated localization microscopy, has enabled superresolution microscopy beyond the diffraction limit. However, the temporal resolution of SMLM is limited by the time needed to acquire sufficient sparse single-molecule activation events to successfully construct a superresolution image. Here, a novel fast SMLM technique is developed to achieve superresolution imaging within a much shortened duration. This technique does not require a faster switching rate or a higher activation density, which may cause signal degradation or photodamage/bleaching, but relies on computational algorithms to reconstruct a high-density superresolution image from a low-density one using the concept of blind image inpainting. Our results demonstrate that the technique reduces the acquisition time by up to two orders of magnitude compared to the conventional method while achieving the same high resolution. We anticipate our technique to enable future real-time live cell imaging with even higher resolution.

Entities:  

Keywords:  (100.3010) Image reconstruction techniques; (180.2520) Fluorescence microscopy

Year:  2017        PMID: 30320156      PMCID: PMC6179357          DOI: 10.1364/OPTICA.4.001277

Source DB:  PubMed          Journal:  Optica            Impact factor:   11.104


  17 in total

1.  Image quality assessment: from error visibility to structural similarity.

Authors:  Zhou Wang; Alan Conrad Bovik; Hamid Rahim Sheikh; Eero P Simoncelli
Journal:  IEEE Trans Image Process       Date:  2004-04       Impact factor: 10.856

2.  High-density localization of active molecules using Structured Sparse Model and Bayesian Information Criterion.

Authors:  Tingwei Quan; Hongyu Zhu; Xiaomao Liu; Yongfeng Liu; Jiuping Ding; Shaoqun Zeng; Zhen-Li Huang
Journal:  Opt Express       Date:  2011-08-29       Impact factor: 3.894

3.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

4.  DAOSTORM: an algorithm for high- density super-resolution microscopy.

Authors:  Seamus J Holden; Stephan Uphoff; Achillefs N Kapanidis
Journal:  Nat Methods       Date:  2011-04       Impact factor: 28.547

5.  Fast compressed sensing analysis for super-resolution imaging using L1-homotopy.

Authors:  Hazen P Babcock; Jeffrey R Moffitt; Yunlong Cao; Xiaowei Zhuang
Journal:  Opt Express       Date:  2013-11-18       Impact factor: 3.894

6.  A high-density 3D localization algorithm for stochastic optical reconstruction microscopy.

Authors:  Hazen Babcock; Yaron M Sigal; Xiaowei Zhuang
Journal:  Opt Nanoscopy       Date:  2012

7.  Breaking the diffraction barrier: super-resolution imaging of cells.

Authors:  Bo Huang; Hazen Babcock; Xiaowei Zhuang
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

8.  Simultaneous multiple-emitter fitting for single molecule super-resolution imaging.

Authors:  Fang Huang; Samantha L Schwartz; Jason M Byars; Keith A Lidke
Journal:  Biomed Opt Express       Date:  2011-04-29       Impact factor: 3.732

9.  Fast, three-dimensional super-resolution imaging of live cells.

Authors:  Sara A Jones; Sang-Hee Shim; Jiang He; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2011-05-08       Impact factor: 28.547

10.  Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms.

Authors:  Fang Huang; Tobias M P Hartwich; Felix E Rivera-Molina; Yu Lin; Whitney C Duim; Jane J Long; Pradeep D Uchil; Jordan R Myers; Michelle A Baird; Walther Mothes; Michael W Davidson; Derek Toomre; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2013-05-26       Impact factor: 28.547

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  2 in total

Review 1.  Development of Deep-Learning-Based Single-Molecule Localization Image Analysis.

Authors:  Yoonsuk Hyun; Doory Kim
Journal:  Int J Mol Sci       Date:  2022-06-21       Impact factor: 6.208

2.  Fast DNA-PAINT imaging using a deep neural network.

Authors:  Kaarjel K Narayanasamy; Johanna V Rahm; Siddharth Tourani; Mike Heilemann
Journal:  Nat Commun       Date:  2022-08-27       Impact factor: 17.694

  2 in total

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