Literature DB >> 30316580

Post-transcriptional Regulatory Functions of Mammalian Pumilio Proteins.

Aaron C Goldstrohm1, Traci M Tanaka Hall2, Katherine M McKenney3.   

Abstract

Mammalian Pumilio proteins, PUM1 and PUM2, are members of the PUF family of sequence-specific RNA-binding proteins. In this review, we explore their mechanisms, regulatory networks, biological functions, and relevance to diseases. Pumilio proteins bind an extensive network of mRNAs and repress protein expression by inhibiting translation and promoting mRNA decay. Opposingly, in certain contexts, they can activate protein expression. Pumilio proteins also regulate noncoding (nc)RNAs. The ncRNA, ncRNA activated by DNA damage (NORAD), can in turn modulate Pumilio activity. Genetic analysis provides new insights into Pumilio protein function. They are essential for growth and development. They control diverse processes, including stem cell fate, and neurological functions, such as behavior and memory formation. Novel findings show that their dysfunction contributes to neurodegeneration, epilepsy, movement disorders, intellectual disability, infertility, and cancer.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30316580      PMCID: PMC6251728          DOI: 10.1016/j.tig.2018.09.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  121 in total

1.  Structure of Pumilio reveals similarity between RNA and peptide binding motifs.

Authors:  T A Edwards; S E Pyle; R P Wharton; A K Aggarwal
Journal:  Cell       Date:  2001-04-20       Impact factor: 41.582

2.  PUF proteins bind Pop2p to regulate messenger RNAs.

Authors:  Aaron C Goldstrohm; Brad A Hook; Daniel J Seay; Marvin Wickens
Journal:  Nat Struct Mol Biol       Date:  2006-05-21       Impact factor: 15.369

3.  P-Body Purification Reveals the Condensation of Repressed mRNA Regulons.

Authors:  Arnaud Hubstenberger; Maïté Courel; Marianne Bénard; Sylvie Souquere; Michèle Ernoult-Lange; Racha Chouaib; Zhou Yi; Jean-Baptiste Morlot; Annie Munier; Magali Fradet; Maëlle Daunesse; Edouard Bertrand; Gérard Pierron; Julien Mozziconacci; Michel Kress; Dominique Weil
Journal:  Mol Cell       Date:  2017-09-28       Impact factor: 17.970

Review 4.  GABAergic mechanisms in epilepsy.

Authors:  D M Treiman
Journal:  Epilepsia       Date:  2001       Impact factor: 5.864

5.  A eukaryotic translation initiation factor 4E-binding protein promotes mRNA decapping and is required for PUF repression.

Authors:  Nathan H Blewett; Aaron C Goldstrohm
Journal:  Mol Cell Biol       Date:  2012-08-13       Impact factor: 4.272

6.  The Pumilio RNA-binding domain is also a translational regulator.

Authors:  R P Wharton; J Sonoda; T Lee; M Patterson; Y Murata
Journal:  Mol Cell       Date:  1998-05       Impact factor: 17.970

7.  The Drosophila pumilio gene: an unusually long transcription unit and an unusual protein.

Authors:  P M Macdonald
Journal:  Development       Date:  1992-01       Impact factor: 6.868

8.  Pumilio-2 function in the mouse nervous system.

Authors:  Henrike Siemen; Damien Colas; H Craig Heller; Oliver Brüstle; Renee A Reijo Pera
Journal:  PLoS One       Date:  2011-10-07       Impact factor: 3.240

9.  Genetic exploration of the exit from self-renewal using haploid embryonic stem cells.

Authors:  Martin Leeb; Sabine Dietmann; Maike Paramor; Hitoshi Niwa; Austin Smith
Journal:  Cell Stem Cell       Date:  2014-01-09       Impact factor: 24.633

10.  Analysis Tool Web Services from the EMBL-EBI.

Authors:  Hamish McWilliam; Weizhong Li; Mahmut Uludag; Silvano Squizzato; Young Mi Park; Nicola Buso; Andrew Peter Cowley; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2013-05-13       Impact factor: 16.971

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  43 in total

1.  Preparation of cooperative RNA recognition complexes for crystallographic structural studies.

Authors:  Chen Qiu; Aaron C Goldstrohm; Traci M Tanaka Hall
Journal:  Methods Enzymol       Date:  2019-05-02       Impact factor: 1.600

2.  A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins.

Authors:  Inga Jarmoskaite; Sarah K Denny; Pavanapuresan P Vaidyanathan; Winston R Becker; Johan O L Andreasson; Curtis J Layton; Kalli Kappel; Varun Shivashankar; Raashi Sreenivasan; Rhiju Das; William J Greenleaf; Daniel Herschlag
Journal:  Mol Cell       Date:  2019-05-08       Impact factor: 17.970

3.  TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs.

Authors:  Annkatrin Bressin; Roman Schulte-Sasse; Davide Figini; Erika C Urdaneta; Benedikt M Beckmann; Annalisa Marsico
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

4.  Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.

Authors:  Chen Qiu; Robert C Dutcher; Douglas F Porter; Yoav Arava; Marvin Wickens; Traci M Tanaka Hall
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

5.  Ribonucleoprotein Capture by in Vivo Expression of a Designer Pentatricopeptide Repeat Protein in Arabidopsis.

Authors:  James J McDermott; Kenneth P Watkins; Rosalind Williams-Carrier; Alice Barkan
Journal:  Plant Cell       Date:  2019-05-23       Impact factor: 11.277

Review 6.  Protein Translation and Psychiatric Disorders.

Authors:  Sophie Laguesse; Dorit Ron
Journal:  Neuroscientist       Date:  2019-07-04       Impact factor: 7.519

7.  Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts.

Authors:  Kiel T Tietz; Thomas L Gallagher; Monica C Mannings; Zachary T Morrow; Nicolas L Derr; Sharon L Amacher
Journal:  Dev Biol       Date:  2020-04-01       Impact factor: 3.582

8.  Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learning.

Authors:  Jiajun Hong; Yongchao Luo; Yang Zhang; Junbiao Ying; Weiwei Xue; Tian Xie; Lin Tao; Feng Zhu
Journal:  Brief Bioinform       Date:  2020-07-15       Impact factor: 11.622

9.  Repression of PUM1-mediated mRNA decay activates translesion synthesis after DNA damage.

Authors:  Toshimichi Yamada; Xiaoning Sun; Nobuyoshi Akimitsu
Journal:  Mol Cell Oncol       Date:  2020-10-12

10.  Unique repression domains of Pumilio utilize deadenylation and decapping factors to accelerate destruction of target mRNAs.

Authors:  René M Arvola; Chung-Te Chang; Joseph P Buytendorp; Yevgen Levdansky; Eugene Valkov; Peter L Freddolino; Aaron C Goldstrohm
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

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