Literature DB >> 30311371

ClinGen's GenomeConnect registry enables patient-centered data sharing.

Juliann M Savatt1, Danielle R Azzariti2, W Andrew Faucett1,3, Steven Harrison2,4, Jennifer Hart5, Brandi Kattman5, Melissa J Landrum5, David H Ledbetter1,3, Vanessa Rangel Miller6, Emily Palen1, Heidi L Rehm2,4,7,8, Jud Rhode6, Stefanie Turner1,9, Jo Anne Vidal6, Karen E Wain1, Erin Rooney Riggs1, Christa Lese Martin1,3.   

Abstract

GenomeConnect, the NIH-funded Clinical Genome Resource (ClinGen) patient registry, engages patients in data sharing to support the goal of creating a genomic knowledge base to inform clinical care and research. Participant self-reported health information and genomic variants from genetic testing reports are curated and shared with public databases, such as ClinVar. There are four primary benefits of GenomeConnect: (1) sharing novel genomic data-47.9% of variants were new to ClinVar, highlighting patients as a genomic data source; (2) contributing additional phenotypic information-of the 52.1% of variants already in ClinVar, GenomeConnect provided enhanced case-level data; (3) providing a way for patients to receive variant classification updates if the reporting laboratory submits to ClinVar-97.3% of responding participants opted to receive such information and 13 updates have been identified; and (4) supporting connections with others, including other participants, clinicians, and researchers to enable the exchange of information and support-60.4% of participants have opted to partake in participant matching. Moving forward, ClinGen plans to increase patient-centric data sharing by partnering with other existing patient groups. By engaging patients, more information is contributed to the public knowledge base, benefiting both patients and the genomics community.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  ClinGen; ClinVar; genomic data sharing; matchmaking; patient registry; variant interpretation

Mesh:

Year:  2018        PMID: 30311371      PMCID: PMC6188701          DOI: 10.1002/humu.23633

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  17 in total

1.  GenomeConnect: matchmaking between patients, clinical laboratories, and researchers to improve genomic knowledge.

Authors:  Brianne E Kirkpatrick; Erin Rooney Riggs; Danielle R Azzariti; Vanessa Rangel Miller; David H Ledbetter; David T Miller; Heidi Rehm; Christa Lese Martin; W Andrew Faucett
Journal:  Hum Mutat       Date:  2015-08-06       Impact factor: 4.878

2.  The Matchmaker Exchange: a platform for rare disease gene discovery.

Authors:  Anthony A Philippakis; Danielle R Azzariti; Sergi Beltran; Anthony J Brookes; Catherine A Brownstein; Michael Brudno; Han G Brunner; Orion J Buske; Knox Carey; Cassie Doll; Sergiu Dumitriu; Stephanie O M Dyke; Johan T den Dunnen; Helen V Firth; Richard A Gibbs; Marta Girdea; Michael Gonzalez; Melissa A Haendel; Ada Hamosh; Ingrid A Holm; Lijia Huang; Matthew E Hurles; Ben Hutton; Joel B Krier; Andriy Misyura; Christopher J Mungall; Justin Paschall; Benedict Paten; Peter N Robinson; François Schiettecatte; Nara L Sobreira; Ganesh J Swaminathan; Peter E Taschner; Sharon F Terry; Nicole L Washington; Stephan Züchner; Kym M Boycott; Heidi L Rehm
Journal:  Hum Mutat       Date:  2015-10       Impact factor: 4.878

Review 3.  The human phenotype ontology.

Authors:  P N Robinson; S Mundlos
Journal:  Clin Genet       Date:  2010-02-11       Impact factor: 4.438

4.  A new era in the interpretation of human genomic variation.

Authors:  Heidi L Rehm
Journal:  Genet Med       Date:  2017-07-13       Impact factor: 8.822

Review 5.  Rare childhood diseases: how should we respond?

Authors:  Y Zurynski; K Frith; H Leonard; E Elliott
Journal:  Arch Dis Child       Date:  2008-08-06       Impact factor: 3.791

Review 6.  The Human Phenotype Ontology in 2017.

Authors:  Sebastian Köhler; Nicole A Vasilevsky; Mark Engelstad; Erin Foster; Julie McMurry; Ségolène Aymé; Gareth Baynam; Susan M Bello; Cornelius F Boerkoel; Kym M Boycott; Michael Brudno; Orion J Buske; Patrick F Chinnery; Valentina Cipriani; Laureen E Connell; Hugh J S Dawkins; Laura E DeMare; Andrew D Devereau; Bert B A de Vries; Helen V Firth; Kathleen Freson; Daniel Greene; Ada Hamosh; Ingo Helbig; Courtney Hum; Johanna A Jähn; Roger James; Roland Krause; Stanley J F Laulederkind; Hanns Lochmüller; Gholson J Lyon; Soichi Ogishima; Annie Olry; Willem H Ouwehand; Nikolas Pontikos; Ana Rath; Franz Schaefer; Richard H Scott; Michael Segal; Panagiotis I Sergouniotis; Richard Sever; Cynthia L Smith; Volker Straub; Rachel Thompson; Catherine Turner; Ernest Turro; Marijcke W M Veltman; Tom Vulliamy; Jing Yu; Julie von Ziegenweidt; Andreas Zankl; Stephan Züchner; Tomasz Zemojtel; Julius O B Jacobsen; Tudor Groza; Damian Smedley; Christopher J Mungall; Melissa Haendel; Peter N Robinson
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

7.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

8.  ClinVar: public archive of interpretations of clinically relevant variants.

Authors:  Melissa J Landrum; Jennifer M Lee; Mark Benson; Garth Brown; Chen Chao; Shanmuga Chitipiralla; Baoshan Gu; Jennifer Hart; Douglas Hoffman; Jeffrey Hoover; Wonhee Jang; Kenneth Katz; Michael Ovetsky; George Riley; Amanjeev Sethi; Ray Tully; Ricardo Villamarin-Salomon; Wendy Rubinstein; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

9.  PLOS Genetics Data Sharing Policy: In Pursuit of Functional Utility.

Authors:  Gregory S Barsh; Gregory M Cooper; Gregory P Copenhaver; Greg Gibson; Mark I McCarthy; Hua Tang; Scott M Williams
Journal:  PLoS Genet       Date:  2015-12-14       Impact factor: 5.917

10.  Clinical laboratories collaborate to resolve differences in variant interpretations submitted to ClinVar.

Authors:  Steven M Harrison; Jill S Dolinsky; Amy E Knight Johnson; Tina Pesaran; Danielle R Azzariti; Sherri Bale; Elizabeth C Chao; Soma Das; Lisa Vincent; Heidi L Rehm
Journal:  Genet Med       Date:  2017-03-16       Impact factor: 8.822

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3.  Recontacting registry participants with genetic updates through GenomeConnect, the ClinGen patient registry.

Authors:  Juliann M Savatt; Danielle R Azzariti; David H Ledbetter; Emily Palen; Heidi L Rehm; Erin Rooney Riggs; Christa Lese Martin
Journal:  Genet Med       Date:  2021-05-18       Impact factor: 8.822

4.  Rare disease patient matchmaking: development and outcomes of an internet case-finding strategy in the Undiagnosed Diseases Network.

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Review 5.  Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.

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Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

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