Literature DB >> 26178529

GenomeConnect: matchmaking between patients, clinical laboratories, and researchers to improve genomic knowledge.

Brianne E Kirkpatrick1, Erin Rooney Riggs1, Danielle R Azzariti2, Vanessa Rangel Miller3, David H Ledbetter1, David T Miller4,5, Heidi Rehm2,6,7,8, Christa Lese Martin1, W Andrew Faucett1.   

Abstract

As the utility of genetic and genomic testing in healthcare grows, there is need for a high-quality genomic knowledge base to improve the clinical interpretation of genomic variants. Active patient engagement can enhance communication between clinicians, patients, and researchers, contributing to knowledge building. It also encourages data sharing by patients and increases the data available for clinicians to incorporate into individualized patient care, clinical laboratories to utilize in test interpretation, and investigators to use for research. GenomeConnect is a patient portal supported by the Clinical Genome Resource (ClinGen), providing an opportunity for patients to add to the knowledge base by securely sharing their health history and genetic test results. Data can be matched with queries from clinicians, laboratory personnel, and researchers to better interpret the results of genetic testing and build a foundation to support genomic medicine. Participation is online, allowing patients to contribute regardless of location. GenomeConnect supports longitudinal, detailed clinical phenotyping and robust "matching" among research and clinical communities. Phenotype data are gathered using online health questionnaires; genotype data are obtained from genetic test reports uploaded by participants and curated by staff. GenomeConnect empowers patients to actively participate in the improvement of genomic test interpretation and clinical utility.
© 2015 WILEY PERIODICALS, INC.

Entities:  

Keywords:  data sharing; genotype/phenotype; matchmaker exchange; patient portal; patient registry

Mesh:

Year:  2015        PMID: 26178529      PMCID: PMC4575269          DOI: 10.1002/humu.22838

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  12 in total

1.  Towards a Universal Clinical Genomics Database: the 2012 International Standards for Cytogenomic Arrays Consortium Meeting.

Authors:  Erin Rooney Riggs; Karen E Wain; Darlene Riethmaier; Melissa Savage; Bethanny Smith-Packard; Erin B Kaminsky; Heidi L Rehm; Christa Lese Martin; David H Ledbetter; W Andrew Faucett
Journal:  Hum Mutat       Date:  2013-04-02       Impact factor: 4.878

2.  The Matchmaker Exchange: a platform for rare disease gene discovery.

Authors:  Anthony A Philippakis; Danielle R Azzariti; Sergi Beltran; Anthony J Brookes; Catherine A Brownstein; Michael Brudno; Han G Brunner; Orion J Buske; Knox Carey; Cassie Doll; Sergiu Dumitriu; Stephanie O M Dyke; Johan T den Dunnen; Helen V Firth; Richard A Gibbs; Marta Girdea; Michael Gonzalez; Melissa A Haendel; Ada Hamosh; Ingrid A Holm; Lijia Huang; Matthew E Hurles; Ben Hutton; Joel B Krier; Andriy Misyura; Christopher J Mungall; Justin Paschall; Benedict Paten; Peter N Robinson; François Schiettecatte; Nara L Sobreira; Ganesh J Swaminathan; Peter E Taschner; Sharon F Terry; Nicole L Washington; Stephan Züchner; Kym M Boycott; Heidi L Rehm
Journal:  Hum Mutat       Date:  2015-10       Impact factor: 4.878

3.  The laboratory-clinician team: a professional call to action to improve communication and collaboration for optimal patient care in chromosomal microarray testing.

Authors:  Karen E Wain; Erin Riggs; Karen Hanson; Melissa Savage; Darlene Riethmaier; Andrea Muirhead; Elyse Mitchell; Bethanny Smith Packard; W Andrew Faucett
Journal:  J Genet Couns       Date:  2012-05-18       Impact factor: 2.537

4.  Finishing the euchromatic sequence of the human genome.

Authors: 
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

Review 5.  The human phenotype ontology.

Authors:  P N Robinson; S Mundlos
Journal:  Clin Genet       Date:  2010-02-11       Impact factor: 4.438

6.  ClinGen--the Clinical Genome Resource.

Authors:  Heidi L Rehm; Jonathan S Berg; Lisa D Brooks; Carlos D Bustamante; James P Evans; Melissa J Landrum; David H Ledbetter; Donna R Maglott; Christa Lese Martin; Robert L Nussbaum; Sharon E Plon; Erin M Ramos; Stephen T Sherry; Michael S Watson
Journal:  N Engl J Med       Date:  2015-05-27       Impact factor: 91.245

7.  The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease.

Authors:  Peter N Robinson; Sebastian Köhler; Sebastian Bauer; Dominik Seelow; Denise Horn; Stefan Mundlos
Journal:  Am J Hum Genet       Date:  2008-10-23       Impact factor: 11.025

8.  Participant-driven matchmaking in the genomic era.

Authors:  Katherine F Lambertson; Stephen A Damiani; Matthew Might; Robert Shelton; Sharon F Terry
Journal:  Hum Mutat       Date:  2015-08-27       Impact factor: 4.878

9.  Online self-report data for duchenne muscular dystrophy confirms natural history and can be used to assess for therapeutic benefits.

Authors:  Richard T Wang; Cheri A Silverstein Fadlon; J Wes Ulm; Ivana Jankovic; Ascia Eskin; Ake Lu; Vanessa Rangel Miller; Rita M Cantor; Ning Li; Robert Elashoff; Anne S Martin; Holly L Peay; Nancy Halnon; Stanley F Nelson
Journal:  PLoS Curr       Date:  2014-10-17

10.  The shifting model in clinical diagnostics: how next-generation sequencing and families are altering the way rare diseases are discovered, studied, and treated.

Authors:  Matthew Might; Matt Wilsey
Journal:  Genet Med       Date:  2014-03-20       Impact factor: 8.822

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  32 in total

Review 1.  Human genotype-phenotype databases: aims, challenges and opportunities.

Authors:  Anthony J Brookes; Peter N Robinson
Journal:  Nat Rev Genet       Date:  2015-11-10       Impact factor: 53.242

2.  ClinTAD: a tool for copy number variant interpretation in the context of topologically associated domains.

Authors:  Jacob D Spector; Arun P Wiita
Journal:  J Hum Genet       Date:  2019-02-14       Impact factor: 3.172

3.  The Matchmaker Exchange: a platform for rare disease gene discovery.

Authors:  Anthony A Philippakis; Danielle R Azzariti; Sergi Beltran; Anthony J Brookes; Catherine A Brownstein; Michael Brudno; Han G Brunner; Orion J Buske; Knox Carey; Cassie Doll; Sergiu Dumitriu; Stephanie O M Dyke; Johan T den Dunnen; Helen V Firth; Richard A Gibbs; Marta Girdea; Michael Gonzalez; Melissa A Haendel; Ada Hamosh; Ingrid A Holm; Lijia Huang; Matthew E Hurles; Ben Hutton; Joel B Krier; Andriy Misyura; Christopher J Mungall; Justin Paschall; Benedict Paten; Peter N Robinson; François Schiettecatte; Nara L Sobreira; Ganesh J Swaminathan; Peter E Taschner; Sharon F Terry; Nicole L Washington; Stephan Züchner; Kym M Boycott; Heidi L Rehm
Journal:  Hum Mutat       Date:  2015-10       Impact factor: 4.878

4.  Data Sharing Advances Rare and Neglected Disease Clinical Research and Treatments.

Authors:  Rachelle J Bienstock
Journal:  ACS Pharmacol Transl Sci       Date:  2019-08-22

Review 5.  A primer to clinical genome sequencing.

Authors:  James R Priest
Journal:  Curr Opin Pediatr       Date:  2017-10       Impact factor: 2.856

6.  ClinGen's GenomeConnect registry enables patient-centered data sharing.

Authors:  Juliann M Savatt; Danielle R Azzariti; W Andrew Faucett; Steven Harrison; Jennifer Hart; Brandi Kattman; Melissa J Landrum; David H Ledbetter; Vanessa Rangel Miller; Emily Palen; Heidi L Rehm; Jud Rhode; Stefanie Turner; Jo Anne Vidal; Karen E Wain; Erin Rooney Riggs; Christa Lese Martin
Journal:  Hum Mutat       Date:  2018-11       Impact factor: 4.878

7.  ClinGen advancing genomic data-sharing standards as a GA4GH driver project.

Authors:  Lena Dolman; Angela Page; Lawrence Babb; Robert R Freimuth; Harindra Arachchi; Chris Bizon; Matthew Brush; Marc Fiume; Melissa Haendel; David P Hansen; Aleksandar Milosavljevic; Ronak Y Patel; Piotr Pawliczek; Andrew D Yates; Heidi L Rehm
Journal:  Hum Mutat       Date:  2018-11       Impact factor: 4.878

Review 8.  Evolving health care through personal genomics.

Authors:  Heidi L Rehm
Journal:  Nat Rev Genet       Date:  2017-01-31       Impact factor: 53.242

9.  Haploinsufficiency of ARHGAP42 is associated with hypertension.

Authors:  Amanda S Fjorder; Malene B Rasmussen; Mana M Mehrjouy; Lusine Nazaryan-Petersen; Claus Hansen; Mads Bak; Niels Grarup; Anne Nørremølle; Lars A Larsen; Henrik Vestergaard; Torben Hansen; Niels Tommerup; Iben Bache
Journal:  Eur J Hum Genet       Date:  2019-03-21       Impact factor: 4.246

10.  REDBot: Natural language process methods for clinical copy number variation reporting in prenatal and products of conception diagnosis.

Authors:  Mengmeng Liu; Yunshan Zhong; Hongqian Liu; Desheng Liang; Erhong Liu; Yu Zhang; Feng Tian; Qiaowei Liang; David S Cram; Hua Wang; Lingqian Wu; Fuli Yu
Journal:  Mol Genet Genomic Med       Date:  2020-09-22       Impact factor: 2.183

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