Literature DB >> 30301797

Why large icosahedral viruses need scaffolding proteins.

Siyu Li1, Polly Roy2, Alex Travesset3,4, Roya Zandi5.   

Abstract

While small single-stranded viral shells encapsidate their genome spontaneously, many large viruses, such as the herpes simplex virus or infectious bursal disease virus (IBDV), typically require a template, consisting of either scaffolding proteins or an inner core. Despite the proliferation of large viruses in nature, the mechanisms by which hundreds or thousands of proteins assemble to form structures with icosahedral order (IO) is completely unknown. Using continuum elasticity theory, we study the growth of large viral shells (capsids) and show that a nonspecific template not only selects the radius of the capsid, but also leads to the error-free assembly of protein subunits into capsids with universal IO. We prove that as a spherical cap grows, there is a deep potential well at the locations of disclinations that later in the assembly process will become the vertices of an icosahedron. Furthermore, we introduce a minimal model and simulate the assembly of a viral shell around a template under nonequilibrium conditions and find a perfect match between the results of continuum elasticity theory and the numerical simulations. Besides explaining available experimental results, we provide a number of predictions. Implications for other problems in spherical crystals are also discussed.

Entities:  

Keywords:  continuum elasticity theory; scaffolding proteins; self-assembly; virus

Mesh:

Substances:

Year:  2018        PMID: 30301797      PMCID: PMC6205497          DOI: 10.1073/pnas.1807706115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

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Authors:  A Saad; Z H Zhou; J Jakana; W Chiu; F J Rixon
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2.  Grain boundary scars and spherical crystallography.

Authors:  A R Bausch; M J Bowick; A Cacciuto; A D Dinsmore; M F Hsu; D R Nelson; M G Nikolaides; A Travesset; D A Weitz
Journal:  Science       Date:  2003-03-14       Impact factor: 47.728

3.  The Robust Assembly of Small Symmetric Nanoshells.

Authors:  Jef Wagner; Roya Zandi
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

4.  How faceted liquid droplets grow tails.

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-05       Impact factor: 11.205

5.  Self-assembly of polyhedral shells: a molecular dynamics study.

Authors:  D C Rapaport
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-15

6.  Continuum theory of retroviral capsids.

Authors:  T T Nguyen; R F Bruinsma; W M Gelbart
Journal:  Phys Rev Lett       Date:  2006-02-21       Impact factor: 9.161

7.  Monodisperse polymer-virus hybrid nanoparticles.

Authors:  Friso D Sikkema; Marta Comellas-Aragonès; Remco G Fokkink; Benedictus J M Verduin; Jeroen J L M Cornelissen; Roeland J M Nolte
Journal:  Org Biomol Chem       Date:  2006-11-17       Impact factor: 3.876

8.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

9.  Elastic instability of a crystal growing on a curved surface.

Authors:  Guangnan Meng; Jayson Paulose; David R Nelson; Vinothan N Manoharan
Journal:  Science       Date:  2014-02-07       Impact factor: 47.728

10.  ICTV Virus Taxonomy Profile: Corticoviridae.

Authors:  Hanna M Oksanen
Journal:  J Gen Virol       Date:  2017-05       Impact factor: 3.891

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  18 in total

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Authors:  Roi Asor; Daniel Khaykelson; Orly Ben-Nun-Shaul; Yael Levi-Kalisman; Ariella Oppenheim; Uri Raviv
Journal:  Soft Matter       Date:  2020-02-27       Impact factor: 3.679

Review 2.  Cryo-electron microscopy for the study of virus assembly.

Authors:  Daniel Luque; José R Castón
Journal:  Nat Chem Biol       Date:  2020-02-20       Impact factor: 15.040

Review 3.  Virus capsid assembly across different length scales inspire the development of virus-based biomaterials.

Authors:  Ekaterina Selivanovitch; Trevor Douglas
Journal:  Curr Opin Virol       Date:  2019-05-06       Impact factor: 7.090

4.  Tiling a tubule: how increasing complexity improves the yield of self-limited assembly.

Authors:  Thomas E Videbæk; Huang Fang; Daichi Hayakawa; Botond Tyukodi; Michael F Hagan; W Benjamin Rogers
Journal:  J Phys Condens Matter       Date:  2022-01-14       Impact factor: 2.333

5.  Microcompartment assembly around multicomponent fluid cargoes.

Authors:  Lev Tsidilkovski; Farzaneh Mohajerani; Michael F Hagan
Journal:  J Chem Phys       Date:  2022-06-28       Impact factor: 4.304

6.  Equilibrium mechanisms of self-limiting assembly.

Authors:  Michael F Hagan; Gregory M Grason
Journal:  Rev Mod Phys       Date:  2021-06-11       Impact factor: 50.485

7.  Assembly and Stability of Simian Virus 40 Polymorphs.

Authors:  Curt Waltmann; Roi Asor; Uri Raviv; Monica Olvera de la Cruz
Journal:  ACS Nano       Date:  2020-04-02       Impact factor: 15.881

8.  Mechanisms of Scaffold-Mediated Microcompartment Assembly and Size Control.

Authors:  Farzaneh Mohajerani; Evan Sayer; Christopher Neil; Koe Inlow; Michael F Hagan
Journal:  ACS Nano       Date:  2021-03-08       Impact factor: 15.881

Review 9.  Physical virology: From virus self-assembly to particle mechanics.

Authors:  Pedro Buzón; Sourav Maity; Wouter H Roos
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-01-20

10.  Structural puzzles in virology solved with an overarching icosahedral design principle.

Authors:  Reidun Twarock; Antoni Luque
Journal:  Nat Commun       Date:  2019-09-27       Impact factor: 14.919

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