Literature DB >> 30298926

Bond paths between distant atoms do not necessarily indicate dominant interactions.

Mirosław Jabłoński1.   

Abstract

The goal of the article is to revive discussion on the interpretation of bond paths linking distant atoms, particularly tracing weak interactions in dimers. According to the Pendás' concept of privileged exchange channel, a bond path is formed between this pair of competing atoms, which is associated with larger value of the exchange energy. We point out that, due to the short-range nature of the exchange energy, bond paths linking distant atoms clearly become doubtful indicators of dominant intermolecular interactions, particularly if some other characteristics (geometric, spectroscopic, based on electrostatic parameters, etc.) indicate other intermolecular interactions as dominant. Several such cases are thoroughly investigated. We show that electrostatic parameters are much more reliable indicators of dominant intermolecular interactions than bond paths. Then, we pay attention that the presence of ("unexpected", i.e., not necessarily indicating dominant intermolecular interactions) bond paths between pairs of atoms featuring highly expanded charge distributions can be easily explained by visual exploration of isodensity contour plots. As always pointing in the direction of the steepest increase, the gradient vector of the electron density favors areas of its high values gaining higher exchange energy, yet being blind to highly electron deficient areas nearby, which, however, can quite often be involved in dominant intermolecular interactions as strongly suggested by many other bonding analysis. We also suggest that an interatomic component of Hellmann-Feynman force would most likely be the most reliable indicator of attractive or repulsive character of individual interatomic interaction.
© 2018 Wiley Periodicals, Inc. © 2018 Wiley Periodicals, Inc.

Keywords:  IQA; QTAIM; bond; bond path; bonding; electron density; electrostatic energy; exchange channel; exchange energy; interaction energy

Year:  2018        PMID: 30298926     DOI: 10.1002/jcc.25532

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  7 in total

1.  On the ability of pnicogen atoms to engage in both σ and π-hole complexes. Heterodimers of ZF2C6H5 (Z = P, As, Sb, Bi) and NH3.

Authors:  Wiktor Zierkiewicz; Mariusz Michalczyk; Rafał Wysokiński; Steve Scheiner
Journal:  J Mol Model       Date:  2019-05-08       Impact factor: 1.810

2.  Determining Repulsion in Cyclophane Cages.

Authors:  Mirosław Jabłoński
Journal:  Molecules       Date:  2022-06-21       Impact factor: 4.927

3.  Focal Point Evaluation of Energies for Tautomers and Isomers for 3-Hydroxy-2-Butenamide: Evaluation of Competing Internal Hydrogen Bonds of Types -OH…O=, -OH…N, -NH…O=, and CH…X (X=O and N).

Authors:  Zikri Altun; Erdi Ata Bleda; Carl Trindle
Journal:  Molecules       Date:  2021-04-30       Impact factor: 4.411

Review 4.  A Critical Overview of Current Theoretical Methods of Estimating the Energy of Intramolecular Interactions.

Authors:  Mirosław Jabłoński
Journal:  Molecules       Date:  2020-11-25       Impact factor: 4.411

Review 5.  Molecular Tailoring Approach for the Estimation of Intramolecular Hydrogen Bond Energy.

Authors:  Milind M Deshmukh; Shridhar R Gadre
Journal:  Molecules       Date:  2021-05-14       Impact factor: 4.411

6.  Metal-Halogen Bonding Seen through the Eyes of Vibrational Spectroscopy.

Authors:  Vytor P Oliveira; Bruna L Marcial; Francisco B C Machado; Elfi Kraka
Journal:  Materials (Basel)       Date:  2019-12-20       Impact factor: 3.623

7.  Versatility of the Cyano Group in Intermolecular Interactions.

Authors:  Steve Scheiner
Journal:  Molecules       Date:  2020-09-30       Impact factor: 4.411

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.