Literature DB >> 30288641

A Kinetic Analysis of Coupled (or Auxiliary) Enzyme Reactions.

Justin Eilertsen1, Santiago Schnell2,3.   

Abstract

As a case study, we consider a coupled (or auxiliary) enzyme assay of two reactions obeying the Michaelis-Menten mechanism. The coupled reaction consists of a single-substrate, single-enzyme non-observable reaction followed by another single-substrate, single-enzyme observable reaction (indicator reaction). In this assay, the product of the non-observable reaction is the substrate of the indicator reaction. A mathematical analysis of the reaction kinetics is performed, and it is found that after an initial fast transient, the coupled reaction is described by a pair of interacting Michaelis-Menten equations. Moreover, we show that when the indicator reaction is fast, the quasi-steady-state dynamics are governed by three fast variables and one slow variable. Timescales that approximate the respective lengths of the indicator and non-observable reactions, as well as conditions for the validity of the Michaelis-Menten equations, are derived. The theory can be extended to deal with more complex sequences of enzyme-catalyzed reactions.

Keywords:  Auxiliary enzyme assay; Coupled enzyme reactions; Initial rate experiments; Reactant-stationary approximation; Schnell–Mendoza equation; Singular perturbation analysis; Slow manifold; Timescale separation

Mesh:

Substances:

Year:  2018        PMID: 30288641     DOI: 10.1007/s11538-018-0513-4

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  3 in total

1.  Phase-plane geometries in coupled enzyme assays.

Authors:  Justin Eilertsen; Wylie Stroberg; Santiago Schnell
Journal:  Math Biosci       Date:  2018-09-24       Impact factor: 2.144

2.  Characteristic, completion or matching timescales? An analysis of temporary boundaries in enzyme kinetics.

Authors:  Justin Eilertsen; Wylie Stroberg; Santiago Schnell
Journal:  J Theor Biol       Date:  2019-01-05       Impact factor: 2.691

3.  Using singular perturbation theory to determine kinetic parameters in a non-standard coupled enzyme assay.

Authors:  Mohit P Dalwadi; Diego Orol; Frederik Walter; Nigel P Minton; John R King; Katalin Kovács
Journal:  J Math Biol       Date:  2020-08-06       Impact factor: 2.259

  3 in total

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