| Literature DB >> 30261179 |
Justin Eilertsen1, Wylie Stroberg1, Santiago Schnell2.
Abstract
The determination of a substrate or enzyme activity by coupling one enzymatic reaction with another easily detectable (indicator) reaction is a common practice in the biochemical sciences. Usually, the kinetics of enzyme reactions is simplified with singular perturbation analysis to derive rate or time course expressions valid under the quasi-steady-state and reactant stationary state assumptions. In this paper, the dynamical behavior of coupled enzyme catalyzed reaction mechanisms is studied by analysis of the phase-plane. We analyze two types of time-dependent slow manifolds - Sisyphus and Laelaps manifolds - that occur in the asymptotically autonomous vector fields that arise from enzyme coupled reactions. Projection onto slow manifolds yields various reduced models, and we present a geometric interpretation of the slow/fast dynamics that occur in the phase-planes of these reactions.Entities:
Keywords: Asymptotically autonomous vector field; Coupled enzyme assays; Differential-algebraic equation; Enzyme kinetics; Laelaps manifold; Michaelis–Menten reactions; Sisyphus manifold; Time-dependent slow manifold
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Year: 2018 PMID: 30261179 PMCID: PMC6476317 DOI: 10.1016/j.mbs.2018.09.008
Source DB: PubMed Journal: Math Biosci ISSN: 0025-5564 Impact factor: 2.144