Literature DB >> 30261179

Phase-plane geometries in coupled enzyme assays.

Justin Eilertsen1, Wylie Stroberg1, Santiago Schnell2.   

Abstract

The determination of a substrate or enzyme activity by coupling one enzymatic reaction with another easily detectable (indicator) reaction is a common practice in the biochemical sciences. Usually, the kinetics of enzyme reactions is simplified with singular perturbation analysis to derive rate or time course expressions valid under the quasi-steady-state and reactant stationary state assumptions. In this paper, the dynamical behavior of coupled enzyme catalyzed reaction mechanisms is studied by analysis of the phase-plane. We analyze two types of time-dependent slow manifolds - Sisyphus and Laelaps manifolds - that occur in the asymptotically autonomous vector fields that arise from enzyme coupled reactions. Projection onto slow manifolds yields various reduced models, and we present a geometric interpretation of the slow/fast dynamics that occur in the phase-planes of these reactions.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Asymptotically autonomous vector field; Coupled enzyme assays; Differential-algebraic equation; Enzyme kinetics; Laelaps manifold; Michaelis–Menten reactions; Sisyphus manifold; Time-dependent slow manifold

Mesh:

Substances:

Year:  2018        PMID: 30261179      PMCID: PMC6476317          DOI: 10.1016/j.mbs.2018.09.008

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  20 in total

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Journal:  Math Biosci       Date:  2016-09-28       Impact factor: 2.144

4.  A Kinetic Analysis of Coupled (or Auxiliary) Enzyme Reactions.

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Journal:  Bull Math Biol       Date:  2018-10-04       Impact factor: 1.758

5.  On the estimation errors of KM and V from time-course experiments using the Michaelis-Menten equation.

Authors:  Wylie Stroberg; Santiago Schnell
Journal:  Biophys Chem       Date:  2016-09-16       Impact factor: 2.352

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Authors:  B H Havsteen; M Garcia-Moreno; E Valero; M C Manjabacas; R Varón
Journal:  Bull Math Biol       Date:  1993-05       Impact factor: 1.758

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Journal:  Arch Biochem Biophys       Date:  1983-07-15       Impact factor: 4.013

10.  An allosteric switch controls the procoagulant and anticoagulant activities of thrombin.

Authors:  O D Dang; A Vindigni; E Di Cera
Journal:  Proc Natl Acad Sci U S A       Date:  1995-06-20       Impact factor: 11.205

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  1 in total

1.  The quasi-steady-state approximations revisited: Timescales, small parameters, singularities, and normal forms in enzyme kinetics.

Authors:  Justin Eilertsen; Santiago Schnell
Journal:  Math Biosci       Date:  2020-03-14       Impact factor: 2.144

  1 in total

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