Literature DB >> 3028337

Marked sequence variation between segment 4 genes of human RV-5 and simian SA 11 rotaviruses.

P Kantharidis, M L Dyall-Smith, I H Holmes.   

Abstract

The complete nucleotide sequence of dsRNA gene segment 4 of a human serotype 2 rotavirus, RV-5, was determined by sequencing overlapping cloned DNA copies of the gene. Segment 4 is 2359 base pairs in length and contains a single long open reading frame of 2325 bases capable of coding for a protein of 775 amino acids, with 5' and 3' non coding regions of 9 and 25 nucleotides respectively. Comparison with SA 11 segment 4 sequence reveals a moderately conserved trypsin cut site and an overall amino acid homology of 69.8 percent. One localized region of 126 amino acids is only 37.8 percent homologous. Localized frame shifts account for some of this variation, but at the nucleotide level the segment 4 sequences show more variability than other rotavirus genes that have been studied so far.

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Year:  1987        PMID： 3028337     DOI： 10.1007/BF01313897

Source DB:  PubMed          Journal:  Arch Virol        ISSN： 0304-8608            Impact factor:   2.574


  36 in total

1.  Location of the major antigenic sites involved in rotavirus serotype-specific neutralization.

Authors:  M L Dyall-Smith; I Lazdins; G W Tregear; I H Holmes
Journal:  Proc Natl Acad Sci U S A       Date:  1986-05       Impact factor: 11.205

2.  Proteolytic enhancement of rotavirus infectivity: biology mechanism.

Authors:  D Y Graham; M K Estes
Journal:  Virology       Date:  1980-03       Impact factor: 3.616

3.  Demonstration of an immunodominant neutralization site by analysis of antigenic variants of SA11 rotavirus.

Authors:  I Lazdins; S Sonza; M L Dyall-Smith; B S Coulson; I H Holmes
Journal:  J Virol       Date:  1985-10       Impact factor: 5.103

4.  Neutralizing monoclonal antibodies to human rotavirus and indications of antigenic drift among strains from neonates.

Authors:  B S Coulson; K J Fowler; R F Bishop; R G Cotton
Journal:  J Virol       Date:  1985-04       Impact factor: 5.103

5.  Gene-coding assignments of rotavirus double-stranded RNA segments 10 and 11.

Authors:  M L Dyall-Smith; I H Holmes
Journal:  J Virol       Date:  1981-06       Impact factor: 5.103

6.  Comparative sequence analysis of rotavirus genomic segment 6--the gene specifying viral subgroups 1 and 2.

Authors:  G W Both; L J Siegman; A R Bellamy; N Ikegami; A J Shatkin; Y Furuichi
Journal:  J Virol       Date:  1984-07       Impact factor: 5.103

7.  Cloning and sequence of UK bovine rotavirus gene segment 7: marked sequence homology with simian rotavirus gene segment 8.

Authors:  M L Dyall-Smith; T C Elleman; P A Hoyne; I H Holmes; A A Azad
Journal:  Nucleic Acids Res       Date:  1983-05-25       Impact factor: 16.971

8.  The magnitude of the global problem of acute diarrhoeal disease: a review of active surveillance data.

Authors:  J D Snyder; M H Merson
Journal:  Bull World Health Organ       Date:  1982       Impact factor: 9.408

9.  Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes.

Authors:  M Kozak
Journal:  Nucleic Acids Res       Date:  1981-10-24       Impact factor: 16.971

10.  Cultivation of human rotaviruses in cell culture.

Authors:  M J Albert; R F Bishop
Journal:  J Med Virol       Date:  1984       Impact factor: 2.327
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  23 in total

1.  Rotavirus YM gene 4: analysis of its deduced amino acid sequence and prediction of the secondary structure of the VP4 protein.

Authors:  S López; I López; P Romero; E Méndez; X Soberón; C F Arias
Journal:  J Virol       Date:  1991-07       Impact factor: 5.103

2.  Detection and characterization of novel rotavirus strains in the United States.

Authors:  M Ramachandran; J R Gentsch; U D Parashar; S Jin; P A Woods; J L Holmes; C D Kirkwood; R F Bishop; H B Greenberg; S Urasawa; G Gerna; B S Coulson; K Taniguchi; J S Bresee; R I Glass
Journal:  J Clin Microbiol       Date:  1998-11       Impact factor: 5.948

3.  Nucleotide sequence and expression in E. coli of the complete P4 type VP4 from a G2 serotype human rotavirus.

Authors:  N P Mahajan; C D Rao
Journal:  Arch Virol       Date:  1996       Impact factor: 2.574

4.  Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication for new G serotype specificity.

Authors:  K Taniguchi; T Urasawa; N Kobayashi; M Gorziglia; S Urasawa
Journal:  J Virol       Date:  1990-11       Impact factor: 5.103

5.  Comparative sequence analysis of VP7 genes from five Australian porcine rotaviruses.

Authors:  J Huang; H S Nagesha; M L Dyall-Smith; I H Holmes
Journal:  Arch Virol       Date:  1989       Impact factor: 2.574

6.  Priming for rotavirus neutralizing antibodies by a VP4 protein-derived synthetic peptide.

Authors:  C F Arias; G Garcia; S Lopez
Journal:  J Virol       Date:  1989-12       Impact factor: 5.103

Review 7.  Rotavirus gene structure and function.

Authors:  M K Estes; J Cohen
Journal:  Microbiol Rev       Date:  1989-12

8.  The rhesus rotavirus gene encoding protein VP3: location of amino acids involved in homologous and heterologous rotavirus neutralization and identification of a putative fusion region.

Authors:  E R Mackow; R D Shaw; S M Matsui; P T Vo; M N Dang; H B Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

9.  Heterogeneity of genome rearrangements in rotaviruses isolated from a chronically infected immunodeficient child.

Authors:  F Hundley; M McIntyre; B Clark; G Beards; D Wood; I Chrystie; U Desselberger
Journal:  J Virol       Date:  1987-11       Impact factor: 5.103

10.  Identification of cross-reactive and serotype 2-specific neutralization epitopes on VP3 of human rotavirus.

Authors:  K Taniguchi; W L Maloy; K Nishikawa; K Y Green; Y Hoshino; S Urasawa; A Z Kapikian; R M Chanock; M Gorziglia
Journal:  J Virol       Date:  1988-07       Impact factor: 5.103
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