Literature DB >> 30278223

Targeting intrinsically disordered proteins at the edge of chaos.

Hao Ruan1, Qi Sun1, Weilin Zhang1, Ying Liu2, Luhua Lai3.   

Abstract

Intrinsically disordered proteins or intrinsically disordered regions (IDPs or IDRs) are those that do not fold into defined tertiary structures under physiological conditions. Given their prevalence in various diseases, IDPs are attractive therapeutic targets. However, because of the dynamic nature of the IDP structure, conventional structure-based drug design methods cannot be directly applied. Thanks to recent progress in understanding the mechanisms underlying IDP and ligand interactions, computational strategies for IDP-targeted rational drug discovery are emerging. Here, we summarize recent developments in computational IDP drug design strategies and their successful applications, analyze the typical properties of reported IDP-binding compounds (iIDPs), and discuss the major challenges ahead as well as possible solutions.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30278223     DOI: 10.1016/j.drudis.2018.09.017

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  28 in total

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Journal:  J Clin Invest       Date:  2019-03-28       Impact factor: 14.808

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Review 3.  Dynamic conformational flexibility and molecular interactions of intrinsically disordered proteins.

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Journal:  J Biosci       Date:  2020       Impact factor: 1.826

4.  Non-Catalytic Subunits Facilitate Quaternary Organization of Plastidic Acetyl-CoA Carboxylase.

Authors:  Kiran-Kumar Shivaiah; Geng Ding; Bryon Upton; Basil J Nikolau
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5.  DisProt: intrinsic protein disorder annotation in 2020.

Authors:  András Hatos; Borbála Hajdu-Soltész; Alexander M Monzon; Nicolas Palopoli; Lucía Álvarez; Burcu Aykac-Fas; Claudio Bassot; Guillermo I Benítez; Martina Bevilacqua; Anastasia Chasapi; Lucia Chemes; Norman E Davey; Radoslav Davidović; A Keith Dunker; Arne Elofsson; Julien Gobeill; Nicolás S González Foutel; Govindarajan Sudha; Mainak Guharoy; Tamas Horvath; Valentin Iglesias; Andrey V Kajava; Orsolya P Kovacs; John Lamb; Matteo Lambrughi; Tamas Lazar; Jeremy Y Leclercq; Emanuela Leonardi; Sandra Macedo-Ribeiro; Mauricio Macossay-Castillo; Emiliano Maiani; José A Manso; Cristina Marino-Buslje; Elizabeth Martínez-Pérez; Bálint Mészáros; Ivan Mičetić; Giovanni Minervini; Nikoletta Murvai; Marco Necci; Christos A Ouzounis; Mátyás Pajkos; Lisanna Paladin; Rita Pancsa; Elena Papaleo; Gustavo Parisi; Emilie Pasche; Pedro J Barbosa Pereira; Vasilis J Promponas; Jordi Pujols; Federica Quaglia; Patrick Ruch; Marco Salvatore; Eva Schad; Beata Szabo; Tamás Szaniszló; Stella Tamana; Agnes Tantos; Nevena Veljkovic; Salvador Ventura; Wim Vranken; Zsuzsanna Dosztányi; Peter Tompa; Silvio C E Tosatto; Damiano Piovesan
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

6.  How We Think about Targeting RNA with Small Molecules.

Authors:  Matthew G Costales; Jessica L Childs-Disney; Hafeez S Haniff; Matthew D Disney
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7.  Designing and repurposing drugs to target intrinsically disordered proteins for cancer treatment: using NUPR1 as a paradigm.

Authors:  Patricia Santofimia-Castaño; Bruno Rizzuti; Yi Xia; Olga Abian; Ling Peng; Adrián Velázquez-Campoy; Juan L Iovanna; José L Neira
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Review 8.  Discovery of drugs that directly target the intrinsically disordered region of the androgen receptor.

Authors:  Marianne D Sadar
Journal:  Expert Opin Drug Discov       Date:  2020-02-26       Impact factor: 6.098

9.  Structural and dynamic characterization of the C-terminal tail of ErbB2: Disordered but not random.

Authors:  Louise Pinet; Ying-Hui Wang; Célia Deville; Ewen Lescop; Françoise Guerlesquin; Ali Badache; François Bontems; Nelly Morellet; Dominique Durand; Nadine Assrir; Carine van Heijenoort
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10.  Computational strategy for intrinsically disordered protein ligand design leads to the discovery of p53 transactivation domain I binding compounds that activate the p53 pathway.

Authors:  Hao Ruan; Chen Yu; Xiaogang Niu; Weilin Zhang; Hanzhong Liu; Limin Chen; Ruoyao Xiong; Qi Sun; Changwen Jin; Ying Liu; Luhua Lai
Journal:  Chem Sci       Date:  2020-12-28       Impact factor: 9.825

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