Literature DB >> 30278218

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA.

Eugene Moore1, Alba Grifoni2, Daniela Weiskopf2, Veronique Schulten2, Cecilia S Lindestam Arlehamn2, Michael Angelo2, John Pham2, Shay Leary3, John Sidney2, David Broide4, April Frazier2, Elizabeth Phillips5, Simon Mallal5, Steven J Mack6, Alessandro Sette7.   

Abstract

DNA sequence-based typing at the HLA-A, -B, -C, -DPB1, -DQA1, -DQB1, and -DRB1 loci was performed on 496 healthy adult donors from San Diego, California, to characterize allele frequencies in support of studies of T cell responses to common allergens. Deviations from Hardy Weinberg proportions were detected at each locus except A and C. Several alleles were found in more than 15% of individuals, including the class II alleles DPB1∗02:01, DPB1∗04:01, DQA1∗01:02, DQA1∗05:01, DQB1∗03:01, and the class I allele A∗02:01. Genotype data will be available in the Allele Frequencies Net Database (AFND 3562).
Copyright © 2018. Published by Elsevier Inc.

Entities:  

Keywords:  Allergy; HLA alleles; HLA typing; San Diego, California

Mesh：

Substances：

Year:  2018        PMID： 30278218      PMCID： PMC6537871          DOI： 10.1016/j.humimm.2018.09.008

Source DB:  PubMed          Journal:  Hum Immunol        ISSN： 0198-8859            Impact factor:   2.850


  7 in total

1.  Next-generation sequencing reveals new information about HLA allele and haplotype diversity in a large European American population.

Authors:  Lisa E Creary; Sridevi Gangavarapu; Kalyan C Mallempati; Gonzalo Montero-Martín; Stacy J Caillier; Adam Santaniello; Jill A Hollenbach; Jorge R Oksenberg; Marcelo A Fernández-Viña
Journal:  Hum Immunol       Date:  2019-07-22       Impact factor: 2.850

2.  SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity.

Authors:  Chihiro Motozono; Mako Toyoda; Jiri Zahradnik; Akatsuki Saito; Hesham Nasser; Toong Seng Tan; Isaac Ngare; Izumi Kimura; Keiya Uriu; Yusuke Kosugi; Yuan Yue; Ryo Shimizu; Jumpei Ito; Shiho Torii; Akiko Yonekawa; Nobuyuki Shimono; Yoji Nagasaki; Rumi Minami; Takashi Toya; Noritaka Sekiya; Takasuke Fukuhara; Yoshiharu Matsuura; Gideon Schreiber; Terumasa Ikeda; So Nakagawa; Takamasa Ueno; Kei Sato
Journal:  Cell Host Microbe       Date:  2021-06-15       Impact factor: 21.023

3.  Comprehensive Analysis of CD4+ T Cell Responses to CMV pp65 Antigen Restricted by Single HLA-DR, -DQ, and -DP Allotype Within an Individual.

Authors:  You-Seok Hyun; Hyeong-A Jo; Yong-Hun Lee; Sun-Mi Kim; In-Cheol Baek; Hyun-Jung Sohn; Hyun-Il Cho; Tai-Gyu Kim
Journal:  Front Immunol       Date:  2021-02-15       Impact factor: 7.561

Review 4.  The Role of HLA in the Association between IgA Deficiency and Celiac Disease.

Authors:  Dimitri Poddighe; Cristina Capittini
Journal:  Dis Markers       Date:  2021-12-13       Impact factor: 3.434

5.  High Resolution HLA ∼A, ∼B, ∼C, ∼DRB1, ∼DQA1, and ∼DQB1 Diversity in South African Populations.

Authors:  Mqondisi Tshabalala; Juanita Mellet; Kuben Vather; Derrick Nelson; Fathima Mohamed; Alan Christoffels; Michael S Pepper
Journal:  Front Genet       Date:  2022-03-04       Impact factor: 4.599

6.  Comprehensive analysis of mycobacterium tuberculosis antigen-specific CD4+ T cell responses restricted by single HLA class II allotype in an individual.

Authors:  Yong-Hun Lee; You-Seok Hyun; Hyeong-A Jo; In-Cheol Baek; Sun-Mi Kim; Hyun-Jung Sohn; Tai-Gyu Kim
Journal:  Front Immunol       Date:  2022-07-28       Impact factor: 8.786

7.  Genetic predisposition to celiac disease in Kazakhstan: Potential impact on the clinical practice in Central Asia.

Authors:  Dimitri Poddighe; Aida Turganbekova; Dana Baymukasheva; Zhazira Saduakas; Zhuldyz Zhanzakova; Saniya Abdrakhmanova
Journal:  PLoS One       Date:  2020-01-02       Impact factor: 3.240
  7 in total

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