Literature DB >> 30269229

Recent advances in CRISPR/Cas9 mediated genome editing in Bacillus subtilis.

Kun-Qiang Hong1,2,3, Ding-Yu Liu1,2,3, Tao Chen1,2,3, Zhi-Wen Wang4,5,6.   

Abstract

Genome editing using engineered nucleases has rapidly transformed from a niche technology to a mainstream method used in various host cells. Its widespread adoption has been largely developed by the emergence of the clustered regularly interspaced short palindromic repeats (CRISPR) system, which uses an easily customizable specificity RNA-guided DNA endonuclease, such as Cas9. Recently, CRISPR/Cas9 mediated genome engineering has been widely applied to model organisms, including Bacillus subtilis, enabling facile, rapid high-fidelity modification of endogenous native genes. Here, we reviewed the recent progress in B. subtilis gene editing using CRISPR/Cas9 based tools, and highlighted state-of-the-art strategies for design of CRISPR/Cas9 system. Finally, future perspectives on the use of CRISPR/Cas9 genome engineering for sequence-specific genome editing in B. subtilis are provided.

Entities:  

Keywords:  Bacillus subtilis; CRISPR/Cas9; Genome editing; High-throughout

Mesh:

Substances:

Year:  2018        PMID: 30269229     DOI: 10.1007/s11274-018-2537-1

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  63 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  The CRISPR/Cas system mediates efficient genome engineering in Bombyx mori.

Authors:  Yueqiang Wang; Zhiqian Li; Jun Xu; Baosheng Zeng; Lin Ling; Lang You; Yazhou Chen; Yongping Huang; Anjiang Tan
Journal:  Cell Res       Date:  2013-10-29       Impact factor: 25.617

3.  Generation of gene-modified mice via Cas9/RNA-mediated gene targeting.

Authors:  Bin Shen; Jun Zhang; Hongya Wu; Jianying Wang; Ke Ma; Zheng Li; Xueguang Zhang; Pumin Zhang; Xingxu Huang
Journal:  Cell Res       Date:  2013-04-02       Impact factor: 25.617

4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

Review 5.  Unravelling the structural and mechanistic basis of CRISPR-Cas systems.

Authors:  John van der Oost; Edze R Westra; Ryan N Jackson; Blake Wiedenheft
Journal:  Nat Rev Microbiol       Date:  2014-06-09       Impact factor: 60.633

6.  Rewiring Cas9 to Target New PAM Sequences.

Authors:  Virginijus Siksnys; Giedrius Gasiunas
Journal:  Mol Cell       Date:  2016-03-17       Impact factor: 17.970

7.  Structure and Engineering of Francisella novicida Cas9.

Authors:  Hisato Hirano; Jonathan S Gootenberg; Takuro Horii; Omar O Abudayyeh; Mika Kimura; Patrick D Hsu; Takanori Nakane; Ryuichiro Ishitani; Izuho Hatada; Feng Zhang; Hiroshi Nishimasu; Osamu Nureki
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

8.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

9.  RNA-guided editing of bacterial genomes using CRISPR-Cas systems.

Authors:  Wenyan Jiang; David Bikard; David Cox; Feng Zhang; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

10.  A guide RNA sequence design platform for the CRISPR/Cas9 system for model organism genomes.

Authors:  Ming Ma; Adam Y Ye; Weiguo Zheng; Lei Kong
Journal:  Biomed Res Int       Date:  2013-10-03       Impact factor: 3.411

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  6 in total

1.  Efficient Large-Scale and Scarless Genome Engineering Enables the Construction and Screening of Bacillus subtilis Biofuel Overproducers.

Authors:  Jiheng Tian; Baowen Xing; Mengyuan Li; Changgeng Xu; Yi-Xin Huo; Shuyuan Guo
Journal:  Int J Mol Sci       Date:  2022-04-27       Impact factor: 6.208

2.  Development and characterization of a CRISPR/Cas9n-based multiplex genome editing system for Bacillus subtilis.

Authors:  Dingyu Liu; Can Huang; Jiaxin Guo; Peiji Zhang; Tao Chen; Zhiwen Wang; Xueming Zhao
Journal:  Biotechnol Biofuels       Date:  2019-09-27       Impact factor: 6.040

3.  Multiple integration of the gene ganA into the Bacillus subtilis chromosome for enhanced β-galactosidase production using the CRISPR/Cas9 system.

Authors:  Hildegard Watzlawick; Josef Altenbuchner
Journal:  AMB Express       Date:  2019-09-30       Impact factor: 3.298

Review 4.  Bacillus subtilis: a universal cell factory for industry, agriculture, biomaterials and medicine.

Authors:  Yuan Su; Chuan Liu; Huan Fang; Dawei Zhang
Journal:  Microb Cell Fact       Date:  2020-09-03       Impact factor: 5.328

5.  Development and application of a rapid all-in-one plasmid CRISPR-Cas9 system for iterative genome editing in Bacillus subtilis.

Authors:  Yu Zou; Lu Qiu; Aowen Xie; Wenyuan Han; Shangbo Zhang; Jinshan Li; Shumiao Zhao; Yingjun Li; Yunxiang Liang; Yongmei Hu
Journal:  Microb Cell Fact       Date:  2022-08-23       Impact factor: 6.352

6.  A Simplified Method for CRISPR-Cas9 Engineering of Bacillus subtilis.

Authors:  Ankita J Sachla; Alexander J Alfonso; John D Helmann
Journal:  Microbiol Spectr       Date:  2021-09-15
  6 in total

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