Literature DB >> 30266950

A variant at 9q34.11 is associated with HLA-DQB1*06:02 negative essential hypersomnia.

Taku Miyagawa1,2, Seik-Soon Khor3, Hiromi Toyoda3, Takashi Kanbayashi4,5, Aya Imanishi4, Yohei Sagawa4, Nozomu Kotorii6,7, Tatayu Kotorii7, Yu Ariyoshi8, Yuji Hashizume6, Kimihiro Ogi6, Hiroshi Hiejima6, Yuichi Kamei9, Akiko Hida10, Masayuki Miyamoto11, Azusa Ikegami12, Yamato Wada13, Masanori Takami14, Yuichi Higashiyama15, Ryoko Miyake15, Hideaki Kondo16, Yota Fujimura17,18, Yoshiyuki Tamura17, Yukari Taniyama19, Naoto Omata20, Yuji Tanaka20, Shunpei Moriya21, Hirokazu Furuya22,23, Mitsuhiro Kato24,25, Yoshiya Kawamura26, Takeshi Otowa27, Akinori Miyashita28, Hiroto Kojima29, Hiroh Saji29, Mihoko Shimada30,3, Maria Yamasaki3, Takumi Kobayashi3,31, Rumi Misawa3,31, Yosuke Shigematsu32, Ryozo Kuwano28, Tsukasa Sasaki33, Jun Ishigooka34, Yuji Wada20, Kazuhito Tsuruta19, Shigeru Chiba17, Fumiaki Tanaka15, Naoto Yamada14, Masako Okawa35,36,37, Kenji Kuroda13, Kazuhiko Kume12,38,39, Koichi Hirata11, Naohisa Uchimura6, Tetsuo Shimizu4,5, Yuichi Inoue37,40, Yutaka Honda41, Kazuo Mishima4,5,10, Makoto Honda30,41, Katsushi Tokunaga3.   

Abstract

Essential hypersomnia (EHS) is a lifelong disorder characterized by excessive daytime sleepiness without cataplexy. EHS is associated with human leukocyte antigen (HLA)-DQB1*06:02, similar to narcolepsy with cataplexy (narcolepsy). Previous studies suggest that DQB1*06:02-positive and -negative EHS are different in terms of their clinical features and follow different pathological pathways. DQB1*06:02-positive EHS and narcolepsy share the same susceptibility genes. In the present study, we report a genome-wide association study with replication for DQB1*06:02-negative EHS (408 patients and 2247 healthy controls, all Japanese). One single-nucleotide polymorphism, rs10988217, which is located 15-kb upstream of carnitine O-acetyltransferase (CRAT), was significantly associated with DQB1*06:02-negative EHS (P = 7.5 × 10-9, odds ratio = 2.63). The risk allele of the disease-associated SNP was correlated with higher expression levels of CRAT in various tissues and cell types, including brain tissue. In addition, the risk allele was associated with levels of succinylcarnitine (P = 1.4 × 10-18) in human blood. The leading SNP in this region was the same in associations with both DQB1*06:02-negative EHS and succinylcarnitine levels. The results suggest that DQB1*06:02-negative EHS may be associated with an underlying dysfunction in energy metabolic pathways.

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Year:  2018        PMID: 30266950     DOI: 10.1038/s10038-018-0518-8

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  40 in total

1.  Cerebrospinal fluid carnitine levels in patients with Alzheimer's disease.

Authors:  J C Rubio; F de Bustos; J A Molina; F J Jiménez-Jiménez; J Benito-León; M A Martín; Y Campos; M Ortí-Pareja; F Cabrera-Valdivia; J Arenas
Journal:  J Neurol Sci       Date:  1998-03-05       Impact factor: 3.181

2.  Hypocretin (orexin) deficiency in human narcolepsy.

Authors:  S Nishino; B Ripley; S Overeem; G J Lammers; E Mignot
Journal:  Lancet       Date:  2000-01-01       Impact factor: 79.321

3.  Difference in the characteristics of subjective and objective sleepiness between narcolepsy and essential hypersomnia.

Authors:  Yoko Komada; Yuichi Inoue; Junko Mukai; Shuichiro Shirakawa; Kiyohisa Takahashi; Yutaka Honda
Journal:  Psychiatry Clin Neurosci       Date:  2005-04       Impact factor: 5.188

4.  Variant between CPT1B and CHKB associated with susceptibility to narcolepsy.

Authors:  Taku Miyagawa; Minae Kawashima; Nao Nishida; Jun Ohashi; Ryosuke Kimura; Akihiro Fujimoto; Mihoko Shimada; Shinichi Morishita; Takashi Shigeta; Ling Lin; Seung-Chul Hong; Juliette Faraco; Yoon-Kyung Shin; Jong-Hyun Jeong; Yuji Okazaki; Shoji Tsuji; Makoto Honda; Yutaka Honda; Emmanuel Mignot; Katsushi Tokunaga
Journal:  Nat Genet       Date:  2008-09-28       Impact factor: 38.330

5.  Fasting-induced reduction in locomotor activity and reduced response of orexin neurons in carnitine-deficient mice.

Authors:  Goichiro Yoshida; Meng Xian Li; Masahisa Horiuchi; Shiro Nakagawa; Mie Sakata; Satoshi Kuchiiwa; Toshiko Kuchiiwa; Md Abdul Jalil; Laila Begum; Yao Bang Lu; Mikio Iijima; Takeshi Hanada; Masamitsu Nakazato; Zhi-Li Huang; Naomi Eguchi; Keiko Kobayashi; Takeyori Saheki
Journal:  Neurosci Res       Date:  2006-03-15       Impact factor: 3.304

6.  Measurement of succinyl-carnitine and methylmalonyl-carnitine on dried blood spot by liquid chromatography-tandem mass spectrometry.

Authors:  Cristiano Rizzo; Sara Boenzi; Rita Inglese; Giancarlo la Marca; Maurizio Muraca; Tegra Barreiro Martinez; David W Johnson; Eleonora Zelli; Carlo Dionisi-Vici
Journal:  Clin Chim Acta       Date:  2013-11-22       Impact factor: 3.786

7.  Crystal structure of carnitine acetyltransferase and implications for the catalytic mechanism and fatty acid transport.

Authors:  Gerwald Jogl; Liang Tong
Journal:  Cell       Date:  2003-01-10       Impact factor: 41.582

8.  Population structure and eigenanalysis.

Authors:  Nick Patterson; Alkes L Price; David Reich
Journal:  PLoS Genet       Date:  2006-12       Impact factor: 5.917

9.  Metabolic flexibility and carnitine flux: The role of carnitine acyltransferase in glucose homeostasis.

Authors:  Yugo Miyata; Iichiro Shimomura
Journal:  J Diabetes Investig       Date:  2013-03-26       Impact factor: 4.232

10.  Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.

Authors:  Ralph Burkhardt; Holger Kirsten; Frank Beutner; Lesca M Holdt; Arnd Gross; Andrej Teren; Anke Tönjes; Susen Becker; Knut Krohn; Peter Kovacs; Michael Stumvoll; Daniel Teupser; Joachim Thiery; Uta Ceglarek; Markus Scholz
Journal:  PLoS Genet       Date:  2015-09-24       Impact factor: 5.917

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