| Literature DB >> 30258423 |
Ifigeneia Kyrkou1, Taneli Pusa2,3,4, Lea Ellegaard-Jensen1, Marie-France Sagot2,3, Lars Hestbjerg Hansen1.
Abstract
Xylella fastidiosa is a notorious plant pathogenic bacterium that represents a threat to crops worldwide. Its subspecies, Xylella fastidiosa subsp. fastidiosa is the causal agent of Pierce's disease of grapevines. Pierce's disease has presented a serious challenge for the grapevine industry in the United States and turned into an epidemic in Southern California due to the invasion of the insect vector Homalodisca vitripennis. In an attempt to minimize the effects of Xylella fastidiosa subsp. fastidiosa in vineyards, various studies have been developing and testing strategies to prevent the occurrence of Pierce's disease, i.e., prophylactic strategies. Research has also been undertaken to investigate therapeutic strategies to cure vines infected by Xylella fastidiosa subsp. fastidiosa. This report explicitly reviews all the strategies published to date and specifies their current status. Furthermore, an epidemiological model of Xylella fastidiosa subsp. fastidiosa is proposed and key parameters for the spread of Pierce's disease deciphered in a sensitivity analysis of all model parameters. Based on these results, it is concluded that future studies should prioritize therapeutic strategies, while investments should only be made in prophylactic strategies that have demonstrated promising results in vineyards.Entities:
Keywords: Homalodisca vitripennis; Pierce's disease; Xylella fastidiosa; control strategies; epidemiological model; grapevine; prophylactic; therapeutic
Year: 2018 PMID: 30258423 PMCID: PMC6143690 DOI: 10.3389/fmicb.2018.02141
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Summary of promising strategies to prevent infection with Xff in vineyards (group A).
| Control of insect vectors | Insecticides (esp. neocotinoids) | Applied in vineyards and nurseries | Daugherty et al., |
| Kaolin-based products | Tested in the vineyard | Tubajika et al., | |
| Screen barrier | Tested in the vineyard | Blua et al., | |
| Mimetic insecticidal peptides | Under development | Federici, | |
| Paratransgenesis with E325 | Tested | Arora, | |
| Virus HoCV-1 | Tested | Hunnicutt et al., | |
| Fungus | Tested | Cabanillas and Jones, | |
| Egg parasitoids (esp. | Tested in California and French Polynesia | Grandgirard et al., | |
| Control of non-vine host plants and vine propagation material | Removing wild plant hosts | Applied in vineyards | EFSA PLH Panel, |
| Sanitating | Applied in nurseries | Goheen et al., | |
| Alteration to cropping techniques | Roguing vines with persistent PD | Applied in vineyards | Sisterson and Stenger, |
| Regulated deficit irrigation | Tested in the vineyard | Krugner and Backus, | |
| Breeding or engineering PD-resistant/tolerant | N18-6 × Flame Seedless lines | Tested in the greenhouse | Lin et al., |
| Hybrid vines with gene PdR1b | Tested in the vineyard | Walker and Tenscher, | |
| Rootstock TS-50 expressing pPGIP | Tested in the vineyard | Dandekar et al., | |
| Rootstocks expressing CAP | Tested in the vineyard | Dandekar et al., | |
| VvPR1 and UT456 transgenes | Tested in the vineyard | Lindow et al., | |
| Vines expressing RpfF | Tested in the vineyard | Lindow et al., | |
| Control | Inoculating with strain EB92-1 | Tested in the vineyard | Hopkins et al., |
| Inoculating with strain ΔPD1311 | Tested in the greenhouse | Burr et al., | |
| Control | endophytic fungi and bacteria | Tested in the greenhouse | Rolshausen and Roper, |
| DSF-producing/inhibitory strains | Tested in the greenhouse | Lindow et al., |
Summary of promising strategies to exclude Xff from an infected vineyard (group B).
| Bacteriophage cocktails | Lytic phages Sano, Salvo, Paz & Prado | Tested in the greenhouse | Ahern et al., |
| Antagonistic bacteria | Inoculating with | Tested in the greenhouse | Lindow et al., |
| Natural, antibacterial substances | Radicinin | Tested | Rolshausen et al., |
| Antibiotics tetracycline, gentamicin, ampicillin, kanamycin, novobiocin, chloramphenicol and rifampin | Tested | Kuzina et al., | |
| Inoculating with antibiotic streptomycin | Tested in the greenhouse | Kirkpatrick et al., | |
| Antimicrobial peptides PGQ, indolicidin, magainin 2, and dermaseptin | Tested | Kuzina et al., | |
| 12 phenolic compounds (esp. catechol, caffeic acid and resveratrol) | Tested | Maddox et al., | |
| Inoculating with microelement zinc sulfate/oxide | Tested in the greenhouse | Kirkpatrick et al., | |
| Other defense-stimulating compounds | Application of ABA by foliar sprays or soil drenches | Tested in the greenhouse | Meyer and Kirkpatrick, |
| Iron chelators lactoferrin, EDTA (ethylenediaminetetraacetic acid) and EDDS | Tested | Koh and Toney, |
Figure 1Summary of all types of prophylactic and therapeutic strategies against PD presented in this paper. Prophylactic strategies address healthy vines in an attempt to prevent PD (A), while therapeutic strategies address Xff-infected vines in order to cure them of PD (B).
Figure 2Schematic of the Xff epidemiological model showing the transition of the vine and GWSS populations to different stages due to Xff presence. State variables referring to the stages of GWSS are healthy S and infected I. State variables referring to the stages of vines are healthy S, latent L and symptomatic I. Displayed on each transition between the state variables are the rates at which they happen in the model (see Equations 1–5). The model parameters can be found in Table 4.
Parameters of the Xff epidemiological model.
| Per capita birth rate of GWSS, time −1 | |
| Per capita replacement rate of (missing) vines, time −1 | |
| The maximum number of vines, unit | |
| Density-independent part of GWSS death rate, time −1 | |
| Density-dependent part of GWSS death rate, vector −1× time −1 | |
| Per capita density-dependent death rate of GWSS, time −1 | |
| PD-independent death and removal rate of vines, time −1 | |
| PD-induced removal rate of vines, time −1 | |
| Per capita inoculation rate for GWSS, time −1 | |
| Per capita inoculation rate for vines, time −1 | |
| Probability of transmission from vine to GWSS during a probe, dimensionless | |
| Probability of transmission from GWSS to vine during a probe, dimensionless | |
| σ | Number of probes a GWSS performs on vines per unit of time, dimensionless |
| ν | Rate of progression from latent to symptomatic vine, time −1 |
| γ | Rate of recovery for latent vines, time −1 |
State variables of the Xff epidemiological model.
| Total number of GWSS | |
| Number of healthy GWSS | |
| Number of infected GWSS | |
| Total number of vines | |
| Number of healthy vines | |
| Number of latent vines | |
| Number of symptomatic vines |
Baseline parameter values applied to calibrate the Xff epidemiological model.
| 0.32, 2.1 eggs per female per day, 30% of which survive | |
| 1/365, giving an average replacement time of 365 days | |
| 10000 | |
| 0.01, giving an average lifetime of 100 days | |
| 1.55 × 10−5, which leads to | |
| 1.1 × 10−4, giving an average lifetime of 25 years | |
| 1/180, giving an expected time of vine removal once symptomatic of 180 days | |
| 0.2 | |
| 0.35 | |
| σ | 1.5, GWSS performs 5 probes, 30% of which are on vines |
| ν | 1/120, average time of progressing 120 days |
| γ | 0.0033, giving a 28% chance of recovery once a vine has become latent |
Figure 3Equilibrium prevalence of PD in the GWSS population (A) and in the vine population (B), as a function of GWSS density, i.e., the relation between the equilibrium total number of GWSS, N*and the maximum number of vines N. The equilibrium values are presented using the expression of the state variables in the fractional system. These are infected GWSS over the total number of GWSS i, healthy vines over the maximum number of vines s, latent vines over the maximum number of vines l and infected vines over the maximum number of vines i. Denoted as N/N is the number of vines in the population at a given time over the maximum number of vines. To obtain the equilibria at different GWSS densities, a numerical simulation was run with each value, starting from an initial low level of infection (i = 0.1 and s = 1) until the system had converged to a steady state. Other parameter values remain as in Table 5. The plot shows that PD becomes endemic at a GWSS density of ~0.01 GWSS per vine.
Figure 4A numerical simulation of the model, with parameter values given in Table 5, in order to confirm the existence of a stable endemic equilibrium. The initial conditions for the state variables (Table 3) were: S = 10,000; L = 0; I = 0; S = 18,000; I = 2,000. The plot shows that a stable endemic equilibrium is indeed established within ~2 years for both the GWSS and vine populations (A,B, respectively).
Figure 5The basic reproduction number R0 indicates whether a disease can establish itself in a healthy population through an initial infection. Namely when R0 < 1, the disease-free equilibrium of the whole system, is stable and a small number of infected individuals will not cause endemic PD. GWSS density is defined as , which is the relation between the equilibrium total number of GWSS, N*, and the maximum number of vines N. The plot shows how the combined increase in GWSS density and probing rate positively affects R0. The rest of the model parameters are fixed to the values given in Table 5.
Sensitivity indices of the basic reproduction number R0 to the parameters, evaluated at the values given in Table 5.
| 0.016 | |
| −0.019 | |
| −0.5 | |
| −0.016 | |
| −0.5 | |
| 0.0088 | |
| −0.29 | |
| 0.5 | |
| 0.5 | |
| σ | 1 |
| ν | −0.057 |
| γ | −0.14 |
Sensitivity indices of the endemic equilibrium values of the state variables to the parameters, evaluated at the values given in Table 5.
| −0.77 | 1.0 | −0.27 | 0.00079 | 0.0023 | |
| 0.7 | 0.0 | 0.76 | 0.55 | 1.6 | |
| −0.0038 | 0.0 | 1.0 | −0.003 | −0.0088 | |
| −0.00012 | −0.032 | 0.032 | −0.000096 | −0.00028 | |
| −0.0038 | −1.0 | 1.0 | −0.003 | −0.0088 | |
| −0.012 | 0.0 | 0.00025 | −0.0056 | −0.036 | |
| −0.014 | 0.0 | 0.048 | 0.088 | −0.72 | |
| 0.77 | 0.0 | −0.77 | 0.0023 | 0.0067 | |
| 0.0038 | 0.0 | −1.0 | 0.0030 | 0.0088 | |
| σ | 0.77 | 0.0 | −1.8 | 0.0052 | 0.016 |
| ν | −0.27 | 0.0 | −0.18 | −0.81 | 0.56 |
| γ | −0.0011 | 0.0 | 0.28 | −0.00083 | −0.0025 |
Overview of control strategies and the model parameters that represent them.
| Control of insect vectors | |
| Control of non-vine host plants and vine propagation material | None due to model assumptions |
| Alteration to cropping techniques | |
| Breeding or engineering PD-resistant/-tolerant | |
| Control via avirulent XYLEFA strains | |
| Control via other beneficial bacteria and fungi | |
| Bacteriophages of | |
| Antagonistic bacteria | |
| Natural, antibacterial substances | |
| Other defense-stimulating compounds |
Parameters σ, β.