| Literature DB >> 30256064 |
R Mir1, I A Al Balawi, F M Abu Duhier.
Abstract
Aim: microRNA-423 is an oncogenic factor which is frequently upregulated in cancer. However, associations with breast cancer risk remain inconsistent. Therefore, we investigated the prevalence of microRNA-423 rs6505162C>T gene variation with breast cancer susceptibility in Saudi women. Methodology: This study was conducted on 100 breast cancer patients and 124 matched healthy individuals. Genotyping of the microRNA-423 rs6505162C/T gene variation was performed by using the amplification refractory mutation system PCR method (ARMS-PCR).Entities:
Keywords: microRNA-423; SNP- Single-nucleotide polymorphism; ARMS-Amplification refractory mutation system
Mesh:
Substances:
Year: 2018 PMID: 30256064 PMCID: PMC6249472 DOI: 10.22034/APJCP.2018.19.9.2581
Source DB: PubMed Journal: Asian Pac J Cancer Prev ISSN: 1513-7368
Primer Sequence of miR-423 Genotyping (rs6505162C/T)
| Direction | Sequence | Product size |
|---|---|---|
| miR-423 FO: | 5′-TTTTCCCGGATGGAAGCCCGAAGTTTGA-3′ | 336 bp |
| miR-423 RO: | 5′-TTTTGCGGCAACGTATACCCCAATTTCC-3′ | |
| miR-423FI (T allele): | 5′-TGAGGCCCCTCAGTCTTGCTTCCCAA-3′ | 228bp |
| miR-423 RI (C allele): | 5′-CAAGCGGGGAGAAACTCAAGCGCGAGG-3′ | 160bp |
Figure 1Amplification of miR-423 rs6505162 C>T Genotyping by Amplification-Refractory Mutation System PCR
Clinicopathological Characteristics of Breast Cancer Patients
| Parameters | N= | % |
|---|---|---|
| Breast cancer cases | 100 | 100% |
| High risk Breast cancer | 26 | 26% |
| Healthy Controls | 124 | 124 |
| Age Group | ||
| Age<40 | 28 | 28% |
| Age >40 | 72 | 72% |
| Stage Status | ||
| Early (I & II) | 38 | 38% |
| Advanced (III & IV) | 62 | 62% |
| Grading Status | ||
| Grade I | 16 | 16% |
| Grade II | 33 | 33% |
| Grade III | 51 | 51% |
| Estrogen receptor status | ||
| Positive | 65 | 65% |
| Negative | 35 | 35% |
| Progesterone Receptor status | ||
| Positive | 61 | 61% |
| Negative | 39 | 39% |
| Her2/neu status | ||
| Positive | 51 | 51% |
| Negative | 49 | 49% |
| Distant Metastasis status | ||
| Positive | 86 | 86% |
| Negative | 14 | 14% |
Association Of Mir-423 Rs6505162 C>T Gene Variation in Breast Cancer Cases and Controls
| Subjects | N= | CC | CT | TT | Df | X2 | P value |
|---|---|---|---|---|---|---|---|
| Cases | 100 | 25(25%) | 52(52%) | 23(23%) | 2 | 37.42 | 0.0001 |
| Controls | 124 | 81(65%) | 25(20%) | 18(15%) | |||
| Frequencies of T and C allele in cases | C=0.51 | ||||||
| T=0.49 | |||||||
| Frequencies of T and C allele in controls | C=0.75 | ||||||
| T=0.25 | |||||||
Correlation between miR-423 rs6505162C/T Gene Variation and Clinicopathological Characteristics of Breast Cancer Patients
| Clinical Parameter | N | CC | CT | TT | X2 | P-value |
|---|---|---|---|---|---|---|
| 100 | 25 (25%) | 52 (52%) | 23 (23%) | 0.81 | ||
| Age Group | ||||||
| Age<40 | 28 | 07 (25%) | 15 (54%) | 06 (21%) | 0.06 | 0.97 |
| Age >40 | 72 | 18 (25%) | 37 (51%) | 17 (24%) | ||
| Stage status | ||||||
| Early (I & II) | 38 | 08 (21%) | 20 (53%) | 10 (26%) | 13.5 | 0.0015 |
| Advanced (III & IV) | 62 | 17 (27%) | 32 (52%) | 13 (21%) | ||
| Grading status | ||||||
| Grade I | 16 | 05 (31%) | 06 (37%) | 05 (32%) | 1.52 | 0.82 |
| Grade II | 33 | 06 (18%) | 18 (55%) | 09 (27%) | ||
| Grade I | 16 | 05 (31%) | 06 (37%) | 05 (32%) | 1.87 | 0.39 |
| Grade III | 51 | 14 (27%) | 28 (55%) | 09 (18%) | ||
| Estrogen receptor status | ||||||
| Positive | 65 | 20 (31%) | 35 (54%) | 10 (15%) | 7.28 | 0.02 |
| Negative | 35 | 5 (14%) | 17 (49%) | 13 (37%) | ||
| Progesterone Receptor status | ||||||
| Positive | 61 | 15 (25%) | 34 (56%) | 12 (20%) | 1.18 | 0.55 |
| Negative | 39 | 10 (26%) | 18 (46%) | 11 (28%) | ||
| Her2/neu status | ||||||
| Positive | 51 | 14 (27%) | 25 (49%) | 12 (24%) | 0.44 | 0.8 |
| Negative | 49 | 11 (22%) | 27 (55%) | 11 (23%) | ||
| Distant Metastasis status | ||||||
| Positive | 86 | 20 (23%) | 49 (57%) | 17 (20%) | 9.25 | 0.009 |
| Negative | 14 | 05 (36%) | 3 (21%) | 06 (43%) |
Association of miR-423 rs6505162 C>T Gene Variation with Breast Cancer
| Genotypes | Female Healthy controls | Breast cancer patients | OR (95% CI) | Risk Ratio(RR) | P-value | ||
|---|---|---|---|---|---|---|---|
| (N=124) | % | (N=100) | % | ||||
| Codominant | |||||||
| miR-423 -CC | 81 | 65% | 25 | 25% | 1 (ref.) | 1(ref.) | |
| miR-423 -CT | 25 | 20% | 52 | 52% | 6.73 (3.50-12.97) | 2.35 (1.67-3.30) | p=0.0001 |
| miR-423 -TT | 18 | 14.50% | 23 | 23% | 4.14 (1.93-8.87) | 1.74 (1.21-2.49) | p=0.0003 |
| Dominant | |||||||
| miR-423 -CC | 81 | 65.32% | 25 | 37% | 1 (ref.) | 1 (ref.) | |
| miR-423 (CT+ TT) | 43 | 34.70% | 75 | 75% | 5.6 (3.14-1.01) | 2.09 (1.61-2.72) | p=0.0001 |
| Recessive | |||||||
| miR-423 (CC+ CT) | 106 | 85.50% | 77 | 77% | 1 (ref.) | 1 (ref.) | |
| miR-423 (TT) | 18 | 14.50% | 23 | 23% | 1.75 (0.88-3.44) | 1.31 (0.91-1.90) | p=0.139 |
| Allele | |||||||
| miR-423 -C | 187 | 75% | 114 | 53.77% | 1(ref.) | 1 (ref.) | |
| miR-423-T | 61 | 25% | 98 | 46.22% | 2.63 (1.77-3.91) | 1.61 (1.30-2.01) | p=0.0001 |
Figure 2Frequency of miR-423- rs6505162C/T Polymorphism in Breast Cancer Patients of Different Populations
Figure 3Frequency of miR-423- rs6505162 C/T Polymorphism in Gender Matched Healthy Controls
Frequency of miR-423-rs6505162C/T in Breast Cancer Patients of Different Countries
| First author | Year | Country | Ethnicity | N= | CC | CT | TT | N= | CC | CT | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Morales (28) | 2016 | Chile | Caucasian | BC | 440 | 125 (28%) | 229 (52%) | 86 (20%) | 807 | 284 (35%) | 385 (48%) | 138 (17%) |
| Zhang (41) | 2015 | Jiangsu China | Asian | BC | 382 | 231 (60%) | 131 (34%) | 20 (5%) | 189 | 110 (58%) | 69 (37%) | 10 (5%) |
| Smith (27) | 2012 | Australia | Caucasian | BC | 179 | 60 (34%) | 95 (53%) | 24 (13%) | 174 | 52 (30%) | 80 (46%) | 42 (24%) |
| He B (42) | 2015 | Nanjing China | Asian | BC | 450 | 292 (65%) | 142 (32%) | 16 (4%) | 450 | 299 (66%) | 129 (29%) | 22 (5%) |
| Kontorovich (26) | 2010 | Israel | Caucasian | BC | 190 | 68 (36%) | 88 (46%) | 34 (18%) | 206 | 55 (27%) | 102 (50%) | 49 (23%) |
| Ma (43) | 2013 | Shaanxi China | Asian | BC | 192 | 127 (66%) | 57 (30%) | 8 (4%) | 189 | 110 (58%) | 69 (37%) | 10 (5%) |
| Our study | 2017 | Saudi Arabia | Middle east | BC | 100 | 25 (25%) | 52 (52%) | 23 (23%) | 124 | 81 (65%) | 25 (20%) | 18 (15%) |