Literature DB >> 30248579

Strategies for designing non-natural enzymes and binders.

Horst Lechner1, Noelia Ferruz1, Birte Höcker2.   

Abstract

The design of tailor-made enzymes is a major goal in biochemical research that can result in wide-range applications and will lead to a better understanding of how proteins fold and function. In this review we highlight recent advances in enzyme and small molecule binder design. A focus is placed on novel strategies for the design of scaffolds, developments in computational methods, and recent applications of these techniques on receptors, sensors, and enzymes. Further, the integration of computational and experimental methodologies is discussed. The outlined examples of designed enzymes and binders for various purposes highlight the importance of this topic and underline the need for tailor-made proteins.
Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2018        PMID: 30248579     DOI: 10.1016/j.cbpa.2018.07.022

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  12 in total

Review 1.  Synthetic biology approaches to dissecting linear motor protein function: towards the design and synthesis of artificial autonomous protein walkers.

Authors:  Heiner Linke; Birte Höcker; Ken'ya Furuta; Nancy R Forde; Paul M G Curmi
Journal:  Biophys Rev       Date:  2020-07-10

2.  Repurposing an adenine riboswitch into a fluorogenic imaging and sensing tag.

Authors:  Sourav Kumar Dey; Grigory S Filonov; Anthony O Olarerin-George; Benjamin T Jackson; Lydia W S Finley; Samie R Jaffrey
Journal:  Nat Chem Biol       Date:  2021-12-22       Impact factor: 16.174

3.  Computational design of a modular protein sense-response system.

Authors:  Anum A Glasgow; Yao-Ming Huang; Daniel J Mandell; Michael Thompson; Ryan Ritterson; Amanda L Loshbaugh; Jenna Pellegrino; Cody Krivacic; Roland A Pache; Kyle A Barlow; Noah Ollikainen; Deborah Jeon; Mark J S Kelly; James S Fraser; Tanja Kortemme
Journal:  Science       Date:  2019-11-22       Impact factor: 47.728

4.  Bottom-up de novo design of functional proteins with complex structural features.

Authors:  Che Yang; Fabian Sesterhenn; Jaume Bonet; Eva A van Aalen; Leo Scheller; Luciano A Abriata; Johannes T Cramer; Xiaolin Wen; Stéphane Rosset; Sandrine Georgeon; Theodore Jardetzky; Thomas Krey; Martin Fussenegger; Maarten Merkx; Bruno E Correia
Journal:  Nat Chem Biol       Date:  2021-01-04       Impact factor: 15.040

5.  ProteinTools: a toolkit to analyze protein structures.

Authors:  Noelia Ferruz; Steffen Schmidt; Birte Höcker
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

Review 6.  Step-by-step design of proteins for small molecule interaction: A review on recent milestones.

Authors:  José M Pereira; Maria Vieira; Sérgio M Santos
Journal:  Protein Sci       Date:  2021-05-10       Impact factor: 6.993

7.  An Artificial Cofactor Catalyzing the Baylis-Hillman Reaction with Designed Streptavidin as Protein Host*.

Authors:  Horst Lechner; Vincent R Emann; M Breuning; Birte Höcker
Journal:  Chembiochem       Date:  2021-02-16       Impact factor: 3.164

8.  Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design.

Authors:  Noelia Ferruz; Francisco Lobos; Dominik Lemm; Saacnicteh Toledo-Patino; José Arcadio Farías-Rico; Steffen Schmidt; Birte Höcker
Journal:  J Mol Biol       Date:  2020-04-21       Impact factor: 5.469

9.  New computational protein design methods for de novo small molecule binding sites.

Authors:  James E Lucas; Tanja Kortemme
Journal:  PLoS Comput Biol       Date:  2020-10-05       Impact factor: 4.475

10.  Extension of a de novo TIM barrel with a rationally designed secondary structure element.

Authors:  Jonas Gregor Wiese; Sooruban Shanmugaratnam; Birte Höcker
Journal:  Protein Sci       Date:  2021-03-20       Impact factor: 6.725

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