Literature DB >> 30246402

Dichomitus squalens partially tailors its molecular responses to the composition of solid wood.

Paul Daly1, Sara Casado López1, Mao Peng1, Christopher S Lancefield2, Samuel O Purvine3, Young-Mo Kim4, Erika M Zink4, Alice Dohnalkova3, Vasanth R Singan5, Anna Lipzen5, David Dilworth5, Mei Wang5, Vivian Ng5, Errol Robinson3, Galya Orr3, Scott E Baker3, Pieter C A Bruijnincx2, Kristiina S Hildén6, Igor V Grigoriev5, Miia R Mäkelä6, Ronald P de Vries1,6.   

Abstract

White-rot fungi, such as Dichomitus squalens, degrade all wood components and inhabit mixed-wood forests containing both soft- and hardwood species. In this study, we evaluated how D. squalens responded to the compositional differences in softwood [guaiacyl (G) lignin and higher mannan content] and hardwood [syringyl/guaiacyl (S/G) lignin and higher xylan content] using semi-natural solid cultures. Spruce (softwood) and birch (hardwood) sticks were degraded by D. squalens as measured by oxidation of the lignins using 2D-NMR. The fungal response as measured by transcriptomics, proteomics and enzyme activities showed a partial tailoring to wood composition. Mannanolytic transcripts and proteins were more abundant in spruce cultures, while a proportionally higher xylanolytic activity was detected in birch cultures. Both wood types induced manganese peroxidases to a much higher level than laccases, but higher transcript and protein levels of the manganese peroxidases were observed on the G-lignin rich spruce. Overall, the molecular responses demonstrated a stronger adaptation to the spruce rather than birch composition, possibly because D. squalens is mainly found degrading softwoods in nature, which supports the ability of the solid wood cultures to reflect the natural environment.
© 2018 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

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Year:  2018        PMID: 30246402     DOI: 10.1111/1462-2920.14416

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  10 in total

1.  Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens.

Authors:  Paul Daly; Mao Peng; Marcos Di Falco; Anna Lipzen; Mei Wang; Vivian Ng; Igor V Grigoriev; Adrian Tsang; Miia R Mäkelä; Ronald P de Vries
Journal:  Appl Environ Microbiol       Date:  2019-11-14       Impact factor: 4.792

2.  The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds.

Authors:  Joanna E Kowalczyk; Mao Peng; Megan Pawlowski; Anna Lipzen; Vivian Ng; Vasanth Singan; Mei Wang; Igor V Grigoriev; Miia R Mäkelä
Journal:  Front Bioeng Biotechnol       Date:  2019-09-20

3.  Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation.

Authors:  Paul Daly; Mao Peng; Hugh D Mitchell; Young-Mo Kim; Charles Ansong; Heather Brewer; Peter de Gijsel; Mary S Lipton; Lye Meng Markillie; Carrie D Nicora; Galya Orr; Ad Wiebenga; Kristiina S Hildén; Mirjam A Kabel; Scott E Baker; Miia R Mäkelä; Ronald P de Vries
Journal:  Environ Microbiol       Date:  2020-01-06       Impact factor: 5.491

4.  Fungal glycoside hydrolase family 44 xyloglucanases are restricted to the phylum Basidiomycota and show a distinct xyloglucan cleavage pattern.

Authors:  Peicheng Sun; Xinxin Li; Adiphol Dilokpimol; Bernard Henrissat; Ronald P de Vries; Mirjam A Kabel; Miia R Mäkelä
Journal:  iScience       Date:  2021-12-21

5.  Application of CRISPR/Cas9 Tools for Genome Editing in the White-Rot Fungus Dichomitus squalens.

Authors:  Joanna E Kowalczyk; Shreya Saha; Miia R Mäkelä
Journal:  Biomolecules       Date:  2021-10-15

Review 6.  Systems biology-guided understanding of white-rot fungi for biotechnological applications: A review.

Authors:  Teeratas Kijpornyongpan; Alexa Schwartz; Allison Yaguchi; Davinia Salvachúa
Journal:  iScience       Date:  2022-06-18

7.  Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora.

Authors:  Mila Marinovíc; Marcos Di Falco; Maria Victoria Aguilar Pontes; András Gorzsás; Adrian Tsang; Ronald P de Vries; Miia R Mäkelä; Kristiina Hildén
Journal:  Biomolecules       Date:  2022-07-22

8.  Wood degradation by Fomitiporia mediterranea M. Fischer: Physiologic, metabolomic and proteomic approaches.

Authors:  Marion Schilling; Alessandra Maia-Grondard; Raymonde Baltenweck; Emilie Robert; Philippe Hugueney; Christophe Bertsch; Sibylle Farine; Eric Gelhaye
Journal:  Front Plant Sci       Date:  2022-09-26       Impact factor: 6.627

9.  Fungal Treatment Modifies Kraft Lignin for Lignin- and Cellulose-Based Carbon Fiber Precursors.

Authors:  Joona Mikkilä; Mikaela Trogen; Klaus A Y Koivu; Jussi Kontro; Jaana Kuuskeri; Riku Maltari; Zane Dekere; Marianna Kemell; Miia R Mäkelä; Paula A Nousiainen; Michael Hummel; Jussi Sipilä; Kristiina Hildén
Journal:  ACS Omega       Date:  2020-03-10

Review 10.  Evolution of Fungal Carbohydrate-Active Enzyme Portfolios and Adaptation to Plant Cell-Wall Polymers.

Authors:  Hayat Hage; Marie-Noëlle Rosso
Journal:  J Fungi (Basel)       Date:  2021-03-05
  10 in total

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