Literature DB >> 30245541

A semiautomatic algorithm for three-dimensional segmentation of the prostate on CT images using shape and local texture characteristics.

Maysam Shahedi1, Ling Ma1, Martin Halicek2, Rongrong Guo1, Guoyi Zhang1, David M Schuster1, Peter Nieh3, Viraj Master3, Baowei Fei1,3,4.   

Abstract

Prostate segmentation in computed tomography (CT) images is useful for planning and guidance of the diagnostic and therapeutic procedures. However, the low soft-tissue contrast of CT images makes the manual prostate segmentation a time-consuming task with high inter-observer variation. We developed a semi-automatic, three-dimensional (3D) prostate segmentation algorithm using shape and texture analysis and have evaluated the method against manual reference segmentations. In a training data set we defined an inter-subject correspondence between surface points in the spherical coordinate system. We applied this correspondence to model the globular and smoothly curved shape of the prostate with 86, well-distributed surface points using a point distribution model that captures prostate shape variation. We also studied the local texture difference between prostate and non-prostate tissues close to the prostate surface. For segmentation, we used the learned shape and texture characteristics of the prostate in CT images and we used a set of user inputs for prostate localization. We trained our algorithm using 23 CT images and tested it on 10 images. We evaluated the results compared with those of two experts' manual reference segmentations using different error metrics. The average measured Dice similarity coefficient (DSC) and mean absolute distance (MAD) were 88 ± 2% and 1.9 ± 0.5 mm, respectively. The averaged inter-expert difference measured on the same dataset was 91 ± 4% (DSC) and 1.3 ± 0.6 mm (MAD). With no prior intra-patient information, the proposed algorithm showed a fast, robust and accurate performance for 3D CT segmentation.

Entities:  

Year:  2018        PMID: 30245541      PMCID: PMC6149524          DOI: 10.1117/12.2293195

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  14 in total

1.  3D ultrasound image segmentation using wavelet support vector machines.

Authors:  Hamed Akbari; Baowei Fei
Journal:  Med Phys       Date:  2012-06       Impact factor: 4.071

2.  Semi-automatic segmentation of prostate in CT images via coupled feature representation and spatial-constrained transductive lasso.

Authors:  Yinghuan Shi; Yaozong Gao; Shu Liao; Daoqiang Zhang; Yang Gao; Dinggang Shen
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-11       Impact factor: 6.226

3.  Spatially varying accuracy and reproducibility of prostate segmentation in magnetic resonance images using manual and semiautomated methods.

Authors:  Maysam Shahedi; Derek W Cool; Cesare Romagnoli; Glenn S Bauman; Matthew Bastian-Jordan; Eli Gibson; George Rodrigues; Belal Ahmad; Michael Lock; Aaron Fenster; Aaron D Ward
Journal:  Med Phys       Date:  2014-11       Impact factor: 4.071

4.  A Learning-Based CT Prostate Segmentation Method via Joint Transductive Feature Selection and Regression.

Authors:  Yinghuan Shi; Yaozong Gao; Shu Liao; Daoqiang Zhang; Yang Gao; Dinggang Shen
Journal:  Neurocomputing       Date:  2016-01-15       Impact factor: 5.719

5.  The utility of atlas-assisted segmentation in the male pelvis is dependent on the interobserver agreement of the structures segmented.

Authors:  K A Langmack; C Perry; C Sinstead; J Mills; D Saunders
Journal:  Br J Radiol       Date:  2014-08-29       Impact factor: 3.039

6.  Prostate Segmentation in CT Images via Spatial-Constrained Transductive Lasso.

Authors:  Yinghuan Shi; Shu Liao; Yaozong Gao; Daoqiang Zhang; Yang Gao; Dinggang Shen
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2013

7.  Locally-constrained boundary regression for segmentation of prostate and rectum in the planning CT images.

Authors:  Yeqin Shao; Yaozong Gao; Qian Wang; Xin Yang; Dinggang Shen
Journal:  Med Image Anal       Date:  2015-10-02       Impact factor: 8.545

8.  A combined learning algorithm for prostate segmentation on 3D CT images.

Authors:  Ling Ma; Rongrong Guo; Guoyi Zhang; David M Schuster; Baowei Fei
Journal:  Med Phys       Date:  2017-09-22       Impact factor: 4.071

9.  A random walk-based segmentation framework for 3D ultrasound images of the prostate.

Authors:  Ling Ma; Rongrong Guo; Zhiqiang Tian; Baowei Fei
Journal:  Med Phys       Date:  2017-07-18       Impact factor: 4.071

10.  Combining Population and Patient-Specific Characteristics for Prostate Segmentation on 3D CT Images.

Authors:  Ling Ma; Rongrong Guo; Zhiqiang Tian; Rajesh Venkataraman; Saradwata Sarkar; Xiabi Liu; Funmilayo Tade; David M Schuster; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21
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  3 in total

1.  Deep learning-based three-dimensional segmentation of the prostate on computed tomography images.

Authors:  Maysam Shahedi; Martin Halicek; James D Dormer; David M Schuster; Baowei Fei
Journal:  J Med Imaging (Bellingham)       Date:  2019-05-03

2.  Abdominal muscle segmentation from CT using a convolutional neural network.

Authors:  Ka'Toria Edwards; Avneesh Chhabra; James Dormer; Phillip Jones; Robert D Boutin; Leon Lenchik; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-02-28

3.  Three-dimensional prostate CT segmentation through fine-tuning of a pre-trained neural network using no reference labeling.

Authors:  Kayla Caughlin; Maysam Shahedi; Jonathan E Shoag; Christopher Barbieri; Daniel Margolis; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15
  3 in total

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