Literature DB >> 30240512

Applications of mechanistic modelling to clinical and experimental immunology: an emerging technology to accelerate immunotherapeutic discovery and development.

L V Brown1, E A Gaffney1, J Wagg2, M C Coles3.   

Abstract

The application of in-silico modelling is beginning to emerge as a key methodology to advance our understanding of mechanisms of disease pathophysiology and related drug action, and in the design of experimental medicine and clinical studies. From this perspective, we will present a non-technical discussion of a small number of recent and historical applications of mathematical, statistical and computational modelling to clinical and experimental immunology. We focus specifically upon mechanistic questions relating to human viral infection, tumour growth and metastasis and T cell activation. These exemplar applications highlight the potential of this approach to impact upon human immunology informed by ever-expanding experimental, clinical and 'omics' data. Despite the capacity of mechanistic modelling to accelerate therapeutic discovery and development and to de-risk clinical trial design, it is not utilized widely across the field. We outline ongoing challenges facing the integration of mechanistic modelling with experimental and clinical immunology, and suggest how these may be overcome. Advances in key technologies, including multi-scale modelling, machine learning and the wealth of 'omics' data sets, coupled with advancements in computational capacity, are providing the basis for mechanistic modelling to impact on immunotherapeutic discovery and development during the next decade.
© 2018 British Society for Immunology.

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Year:  2018        PMID: 30240512      PMCID: PMC6150250          DOI: 10.1111/cei.13182

Source DB:  PubMed          Journal:  Clin Exp Immunol        ISSN: 0009-9104            Impact factor:   4.330


  41 in total

Review 1.  Systems biology in immunology: a computational modeling perspective.

Authors:  Ronald N Germain; Martin Meier-Schellersheim; Aleksandra Nita-Lazar; Iain D C Fraser
Journal:  Annu Rev Immunol       Date:  2011       Impact factor: 28.527

2.  A comparison of random vs. chemotaxis-driven contacts of T cells with dendritic cells during repertoire scanning.

Authors:  Thomas Riggs; Adrienne Walts; Nicolas Perry; Laura Bickle; Jennifer N Lynch; Amy Myers; Joanne Flynn; Jennifer J Linderman; Mark J Miller; Denise E Kirschner
Journal:  J Theor Biol       Date:  2007-10-18       Impact factor: 2.691

3.  Model-based prediction of phase III overall survival in colorectal cancer on the basis of phase II tumor dynamics.

Authors:  Laurent Claret; Pascal Girard; Paulo M Hoff; Eric Van Cutsem; Klaas P Zuideveld; Karin Jorga; Jan Fagerberg; René Bruno
Journal:  J Clin Oncol       Date:  2009-07-27       Impact factor: 44.544

4.  Adaptation to Stochastic Temporal Variations in Intratumoral Blood Flow: The Warburg Effect as a Bet Hedging Strategy.

Authors:  Curtis A Gravenmier; Miriam Siddique; Robert A Gatenby
Journal:  Bull Math Biol       Date:  2017-05-15       Impact factor: 1.758

5.  Modelling chemotherapy resistance in palliation and failed cure.

Authors:  Helen C Monro; Eamonn A Gaffney
Journal:  J Theor Biol       Date:  2008-12-11       Impact factor: 2.691

6.  A viral dynamic model for treatment regimens with direct-acting antivirals for chronic hepatitis C infection.

Authors:  Bambang S Adiwijaya; Tara L Kieffer; Joshua Henshaw; Karen Eisenhauer; Holly Kimko; John J Alam; Robert S Kauffman; Varun Garg
Journal:  PLoS Comput Biol       Date:  2012-01-05       Impact factor: 4.475

7.  A virtual lymph node model to dissect the requirements for T-cell activation by synapses and kinapses.

Authors:  Hélène D Moreau; Gib Bogle; Philippe Bousso
Journal:  Immunol Cell Biol       Date:  2016-05-10       Impact factor: 5.126

8.  Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models.

Authors:  Cameron Cotten; Jennifer L Reed
Journal:  BMC Bioinformatics       Date:  2013-01-30       Impact factor: 3.169

9.  A phase Ia/Ib clinical trial of metronomic chemotherapy based on a mathematical model of oral vinorelbine in metastatic non-small cell lung cancer and malignant pleural mesothelioma: rationale and study protocol.

Authors:  Xavier Elharrar; Dominique Barbolosi; Joseph Ciccolini; Christophe Meille; Christian Faivre; Bruno Lacarelle; Nicolas André; Fabrice Barlesi
Journal:  BMC Cancer       Date:  2016-04-20       Impact factor: 4.430

10.  Notwithstanding Circumstantial Alibis, Cytotoxic T Cells Can Be Major Killers of HIV-1-Infected Cells.

Authors:  Saikrishna Gadhamsetty; Tim Coorens; Rob J de Boer
Journal:  J Virol       Date:  2016-07-27       Impact factor: 5.103

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  4 in total

1.  Co-expression Networks Identify DHX15 RNA Helicase as a B Cell Regulatory Factor.

Authors:  Thiago Detanico; Richard Virgen-Slane; Seth Steen-Fuentes; Wai W Lin; Antje Rhode-Kurnow; Elizabeth Chappell; Ricardo G Correa; Michael J DiCandido; M Lamine Mbow; Jun Li; Carl F Ware
Journal:  Front Immunol       Date:  2019-12-10       Impact factor: 7.561

Review 2.  Current and prospective computational approaches and challenges for developing COVID-19 vaccines.

Authors:  Woochang Hwang; Winnie Lei; Nicholas M Katritsis; Méabh MacMahon; Kathryn Chapman; Namshik Han
Journal:  Adv Drug Deliv Rev       Date:  2021-02-06       Impact factor: 17.873

3.  De-risking clinical trial failure through mechanistic simulation.

Authors:  Liam V Brown; Jonathan Wagg; Rachel Darley; Andy van Hateren; Tim Elliott; Eamonn A Gaffney; Mark C Coles
Journal:  Immunother Adv       Date:  2022-08-23

4.  CLR01 protects dopaminergic neurons in vitro and in mouse models of Parkinson's disease.

Authors:  Nora Bengoa-Vergniory; Emilie Faggiani; Paula Ramos-Gonzalez; Ecem Kirkiz; Natalie Connor-Robson; Liam V Brown; Ibrar Siddique; Zizheng Li; Siv Vingill; Milena Cioroch; Fabio Cavaliere; Sarah Threlfell; Bradley Roberts; Thomas Schrader; Frank-Gerrit Klärner; Stephanie Cragg; Benjamin Dehay; Gal Bitan; Carlos Matute; Erwan Bezard; Richard Wade-Martins
Journal:  Nat Commun       Date:  2020-09-28       Impact factor: 14.919

  4 in total

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