| Literature DB >> 30225108 |
Tanvirbanu J Malek1, Sahaj A Gandhi2, Vijay Barot3, Mukesh Patel3, Urmila H Patel4.
Abstract
The title compound, C16H14BrN3O5, is a novel halogen (Br) substituted hydrazine derivative. The hydrazine derivatives were the group of compounds with the general structure, R1R2C=NNH2 (Uppal et al., 2011 ▸), with the central RC=NNH2 moiety bridging two different groups on both sides. An all-trans configuration of the backbone (RC=NNH2) results in an extended mol-ecular conformation. The dihedral angle between the 5-bromo-2-meth-oxy-phenyl ring and the nitrophenyl ring is 4.4 (3)°. Intra-molecular N-H⋯O inter-actions form S(6) graph-set motifs, while C-H⋯O and C-H⋯N inter-actions form S(5) graph-set motifs. Symmetry-related mol-ecules are linked by C-H⋯O inter-molecular inter-actions forming an R21(10) graph-set motif. There are nearly face-to-face directional specific π-π stacking inter-actions between the centroids of the nitrophenyl ring and the benzene ring of the 5-bromo-2-meth-oxy group [centroid-centroid distance = 3.6121 (5) Å and slippage = 1.115 Å], which also contributes to the mol-ecular packing. The Hirshfeld surface analysis was performed in order to visualize, explore and qu-antify the inter-molecular inter-actions in the crystal lattice of the title compound.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; graph set motif; hydrazine derivative; hydrogen bond
Year: 2018 PMID: 30225108 PMCID: PMC6127684 DOI: 10.1107/S2056989018011325
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.83 | 2.03 | 2.635 (3) | 129 |
| C3—H3⋯O1 | 0.93 | 2.39 | 2.712 (4) | 100 |
| C6—H6⋯N3 | 0.93 | 2.40 | 2.731 (4) | 101 |
| C6—H6⋯O4i | 0.93 | 2.59 | 3.444 (5) | 152 |
| C15—H15⋯O4i | 0.93 | 2.46 | 3.358 (4) | 161 |
Symmetry code: (i) .
Figure 2A view of part of the crystal structure of the title compound, showing the formation of C—H⋯O hydrogen bonds (dashed bonds).
Figure 3The full two-dimensional fingerprint plots, and those delineated into (a) all interactions (b) Br⋯H, (c) C⋯C, (d) C⋯H/H⋯C, (e) H⋯H and (f) H⋯O/O⋯H contacts showing the percentages of contacts contributed to the total Hirshfeld surface area. (g) Pi chart.
Summary of the various contacts and their contributions to the Hirshfeld surface
| Contacts | Percentage contribution |
|---|---|
| Br⋯C/C⋯Br | 1.6 |
| Br⋯H/H⋯Br | 11.7 |
| Br⋯N/N⋯Br | 0.7 |
| Br⋯O/O⋯Br | 2.8 |
| C⋯C | 8.1 |
| C⋯H/H⋯C | 12.5 |
| C⋯O/O⋯C | 2.7 |
| H⋯H | 27.2 |
| H⋯N/N⋯H | 5.5 |
| H⋯O/O⋯H | 25.1 |
| N⋯O/O⋯N | 1.1 |
| O⋯O | 1.0 |
Experimental details
| Crystal data | |
| Chemical formula | C16H14BrN3O5 |
|
| 408.21 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 8.3262 (11), 14.8369 (19), 14.0764 (13) |
| β (°) | 106.558 (14) |
|
| 1666.8 (4) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 2.50 |
| Crystal size (mm) | 0.09 × 0.08 × 0.06 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan (North |
|
| 0.666, 1.000 |
| No. of measured, independent and observed [ | 4830, 3187, 1726 |
|
| 0.065 |
| (sin θ/λ)max (Å−1) | 0.682 |
| Refinement | |
|
| 0.096, 0.202, 1.09 |
| No. of reflections | 3187 |
| No. of parameters | 235 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.66, −0.69 |
Computer programs: APEX2 and SAINT (Bruker, 2008 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸).
| C16H14BrN3O5 | |
| Monoclinic, | Mo |
| Cell parameters from 1261 reflections | |
| θ = 3.3–23.2° | |
| µ = 2.50 mm−1 | |
| β = 106.558 (14)° | |
| Plate, yellow | |
| 0.09 × 0.08 × 0.06 mm |
| Bruker APEXII CCD diffractometer | 1726 reflections with |
| Radiation source: sealed tube | |
| φ and ω scans | θmax = 29.0°, θmin = 3.6° |
| Absorption correction: multi-scan (North | |
| 4830 measured reflections | |
| 3187 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.66 e Å−3 | |
| 3187 reflections | Δρmin = −0.69 e Å−3 |
| 235 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0076 (10) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.3935 (9) | 0.2162 (5) | 0.6270 (5) | 0.038 (2) | |
| H1 | 0.415174 | 0.223200 | 0.695123 | 0.046* | |
| C2 | 0.2457 (9) | 0.1749 (5) | 0.5739 (5) | 0.0348 (19) | |
| C3 | 0.2169 (9) | 0.1645 (5) | 0.4728 (5) | 0.0339 (18) | |
| H3 | 0.118584 | 0.137270 | 0.435409 | 0.041* | |
| C4 | 0.3340 (9) | 0.1944 (5) | 0.4272 (5) | 0.0328 (18) | |
| C5 | 0.4810 (9) | 0.2391 (5) | 0.4784 (5) | 0.0308 (17) | |
| C6 | 0.5083 (9) | 0.2468 (6) | 0.5818 (5) | 0.040 (2) | |
| H6 | 0.606744 | 0.273342 | 0.620051 | 0.049* | |
| C7 | 0.1197 (10) | 0.1486 (6) | 0.6245 (6) | 0.0386 (19) | |
| C8 | −0.1484 (10) | 0.0834 (7) | 0.6023 (6) | 0.061 (3) | |
| H8A | −0.236862 | 0.055874 | 0.551367 | 0.091* | |
| H8B | −0.107222 | 0.041302 | 0.655468 | 0.091* | |
| H8C | −0.190635 | 0.135968 | 0.626904 | 0.091* | |
| C9 | 0.8528 (10) | 0.3310 (6) | 0.4527 (5) | 0.040 (2) | |
| C10 | 1.0108 (9) | 0.3711 (6) | 0.5111 (5) | 0.0373 (19) | |
| C11 | 1.1267 (10) | 0.4052 (5) | 0.4648 (6) | 0.040 (2) | |
| C12 | 1.2709 (10) | 0.4470 (6) | 0.5203 (6) | 0.046 (2) | |
| H12 | 1.345065 | 0.471252 | 0.488742 | 0.055* | |
| C13 | 1.3069 (10) | 0.4532 (6) | 0.6226 (6) | 0.052 (2) | |
| H13 | 1.404718 | 0.480982 | 0.659877 | 0.063* | |
| C14 | 1.1940 (10) | 0.4174 (6) | 0.6681 (5) | 0.043 (2) | |
| C15 | 1.0485 (9) | 0.3762 (5) | 0.6140 (5) | 0.0357 (18) | |
| H15 | 0.975310 | 0.351682 | 0.646202 | 0.043* | |
| C16 | 1.1856 (12) | 0.4401 (7) | 0.3120 (6) | 0.069 (3) | |
| H16A | 1.141419 | 0.428322 | 0.242387 | 0.104* | |
| H16B | 1.185656 | 0.503869 | 0.323555 | 0.104* | |
| H16C | 1.298062 | 0.417511 | 0.335016 | 0.104* | |
| N1 | 0.2911 (8) | 0.1797 (5) | 0.3208 (4) | 0.0370 (16) | |
| N2 | 0.5978 (8) | 0.2714 (5) | 0.4364 (5) | 0.0424 (18) | |
| N3 | 0.7457 (8) | 0.3049 (5) | 0.4962 (4) | 0.0393 (16) | |
| O1 | −0.0146 (7) | 0.1088 (4) | 0.5621 (4) | 0.0494 (16) | |
| O2 | 0.1325 (7) | 0.1613 (4) | 0.7107 (4) | 0.0548 (17) | |
| O3 | 0.1809 (8) | 0.1260 (5) | 0.2817 (4) | 0.0612 (18) | |
| O4 | 0.3693 (6) | 0.2228 (4) | 0.2728 (3) | 0.0544 (17) | |
| O5 | 1.0838 (7) | 0.3963 (4) | 0.3644 (4) | 0.0545 (17) | |
| BR1 | 1.24638 (13) | 0.41918 (8) | 0.80847 (6) | 0.0681 (5) | |
| H2A | 0.576 (7) | 0.270 (4) | 0.375 (4) | 0.014 (16)* | |
| H9 | 0.825 (7) | 0.329 (4) | 0.386 (4) | 0.012 (15)* |
| C1 | 0.037 (4) | 0.050 (6) | 0.025 (3) | 0.001 (4) | 0.004 (4) | 0.002 (4) |
| C2 | 0.035 (4) | 0.046 (5) | 0.025 (3) | 0.004 (4) | 0.011 (3) | 0.004 (3) |
| C3 | 0.033 (4) | 0.040 (5) | 0.028 (3) | 0.005 (4) | 0.007 (3) | 0.004 (3) |
| C4 | 0.038 (4) | 0.040 (5) | 0.020 (3) | 0.002 (4) | 0.008 (3) | −0.003 (3) |
| C5 | 0.025 (4) | 0.039 (5) | 0.028 (3) | 0.001 (4) | 0.006 (3) | −0.003 (3) |
| C6 | 0.033 (4) | 0.056 (6) | 0.030 (3) | −0.003 (4) | 0.006 (4) | −0.005 (4) |
| C7 | 0.038 (4) | 0.041 (6) | 0.039 (4) | 0.008 (4) | 0.016 (4) | 0.004 (4) |
| C8 | 0.038 (5) | 0.091 (8) | 0.059 (5) | −0.003 (5) | 0.022 (4) | 0.007 (5) |
| C9 | 0.037 (5) | 0.051 (6) | 0.027 (4) | 0.002 (4) | 0.004 (4) | −0.001 (4) |
| C10 | 0.032 (4) | 0.044 (5) | 0.035 (4) | 0.007 (4) | 0.008 (4) | 0.003 (4) |
| C11 | 0.035 (4) | 0.040 (6) | 0.042 (4) | 0.006 (4) | 0.010 (4) | 0.004 (4) |
| C12 | 0.039 (5) | 0.042 (6) | 0.056 (5) | −0.008 (4) | 0.012 (4) | −0.001 (4) |
| C13 | 0.039 (5) | 0.055 (6) | 0.060 (5) | 0.000 (4) | 0.011 (5) | 0.003 (5) |
| C14 | 0.044 (5) | 0.042 (6) | 0.037 (4) | 0.003 (4) | 0.002 (4) | −0.001 (4) |
| C15 | 0.031 (4) | 0.037 (5) | 0.038 (4) | −0.006 (4) | 0.007 (4) | −0.003 (4) |
| C16 | 0.073 (6) | 0.095 (9) | 0.052 (5) | −0.006 (6) | 0.037 (5) | 0.010 (5) |
| N1 | 0.034 (4) | 0.053 (5) | 0.025 (3) | 0.001 (3) | 0.011 (3) | 0.003 (3) |
| N2 | 0.038 (4) | 0.064 (5) | 0.025 (3) | −0.002 (4) | 0.008 (3) | −0.004 (3) |
| N3 | 0.033 (4) | 0.053 (5) | 0.030 (3) | −0.009 (3) | 0.004 (3) | −0.003 (3) |
| O1 | 0.044 (3) | 0.070 (5) | 0.040 (3) | −0.005 (3) | 0.021 (3) | 0.000 (3) |
| O2 | 0.060 (4) | 0.079 (5) | 0.031 (3) | 0.002 (3) | 0.023 (3) | 0.000 (3) |
| O3 | 0.065 (4) | 0.081 (5) | 0.032 (3) | −0.035 (4) | 0.004 (3) | −0.012 (3) |
| O4 | 0.046 (3) | 0.090 (5) | 0.028 (3) | −0.012 (3) | 0.013 (3) | −0.001 (3) |
| O5 | 0.054 (4) | 0.075 (5) | 0.038 (3) | −0.008 (3) | 0.020 (3) | 0.005 (3) |
| BR1 | 0.0721 (8) | 0.0855 (9) | 0.0375 (5) | −0.0200 (6) | 0.0007 (5) | −0.0053 (5) |
| C1—C6 | 1.369 (10) | C9—H9 | 0.90 (5) |
| C1—C2 | 1.386 (10) | C10—C15 | 1.394 (9) |
| C1—H1 | 0.9300 | C10—C11 | 1.404 (10) |
| C2—C3 | 1.383 (9) | C11—O5 | 1.362 (9) |
| C2—C7 | 1.479 (10) | C11—C12 | 1.379 (11) |
| C3—C4 | 1.385 (9) | C12—C13 | 1.388 (11) |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C4—C5 | 1.399 (10) | C13—C14 | 1.385 (11) |
| C4—N1 | 1.454 (8) | C13—H13 | 0.9300 |
| C5—N2 | 1.361 (9) | C14—C15 | 1.377 (10) |
| C5—C6 | 1.411 (9) | C14—BR1 | 1.899 (7) |
| C6—H6 | 0.9300 | C15—H15 | 0.9300 |
| C7—O2 | 1.201 (8) | C16—O5 | 1.428 (9) |
| C7—O1 | 1.346 (9) | C16—H16A | 0.9600 |
| C8—O1 | 1.437 (9) | C16—H16B | 0.9600 |
| C8—H8A | 0.9600 | C16—H16C | 0.9600 |
| C8—H8B | 0.9600 | N1—O3 | 1.221 (8) |
| C8—H8C | 0.9600 | N1—O4 | 1.240 (7) |
| C9—N3 | 1.277 (9) | N2—N3 | 1.371 (8) |
| C9—C10 | 1.464 (11) | N2—H2A | 0.83 (6) |
| C6—C1—C2 | 121.8 (6) | C11—C10—C9 | 120.8 (7) |
| C6—C1—H1 | 119.1 | O5—C11—C12 | 124.1 (7) |
| C2—C1—H1 | 119.1 | O5—C11—C10 | 115.8 (7) |
| C3—C2—C1 | 118.1 (7) | C12—C11—C10 | 120.1 (7) |
| C3—C2—C7 | 121.8 (7) | C11—C12—C13 | 120.9 (8) |
| C1—C2—C7 | 120.0 (6) | C11—C12—H12 | 119.5 |
| C2—C3—C4 | 120.2 (7) | C13—C12—H12 | 119.5 |
| C2—C3—H3 | 119.9 | C14—C13—C12 | 118.6 (8) |
| C4—C3—H3 | 119.9 | C14—C13—H13 | 120.7 |
| C3—C4—C5 | 122.8 (6) | C12—C13—H13 | 120.7 |
| C3—C4—N1 | 115.5 (7) | C15—C14—C13 | 121.5 (7) |
| C5—C4—N1 | 121.7 (6) | C15—C14—BR1 | 119.1 (6) |
| N2—C5—C4 | 124.8 (6) | C13—C14—BR1 | 119.4 (6) |
| N2—C5—C6 | 119.6 (7) | C14—C15—C10 | 120.0 (7) |
| C4—C5—C6 | 115.5 (6) | C14—C15—H15 | 120.0 |
| C1—C6—C5 | 121.6 (7) | C10—C15—H15 | 120.0 |
| C1—C6—H6 | 119.2 | O5—C16—H16A | 109.5 |
| C5—C6—H6 | 119.2 | O5—C16—H16B | 109.5 |
| O2—C7—O1 | 123.1 (7) | H16A—C16—H16B | 109.5 |
| O2—C7—C2 | 125.0 (8) | O5—C16—H16C | 109.5 |
| O1—C7—C2 | 111.9 (6) | H16A—C16—H16C | 109.5 |
| O1—C8—H8A | 109.5 | H16B—C16—H16C | 109.5 |
| O1—C8—H8B | 109.5 | O3—N1—O4 | 122.3 (6) |
| H8A—C8—H8B | 109.5 | O3—N1—C4 | 119.6 (6) |
| O1—C8—H8C | 109.5 | O4—N1—C4 | 118.0 (6) |
| H8A—C8—H8C | 109.5 | C5—N2—N3 | 119.2 (6) |
| H8B—C8—H8C | 109.5 | C5—N2—H2A | 118 (4) |
| N3—C9—C10 | 119.5 (7) | N3—N2—H2A | 122 (4) |
| N3—C9—H9 | 119 (4) | C9—N3—N2 | 116.3 (6) |
| C10—C9—H9 | 121 (4) | C7—O1—C8 | 116.8 (6) |
| C15—C10—C11 | 118.9 (7) | C11—O5—C16 | 118.2 (7) |
| C15—C10—C9 | 120.3 (7) |
| H··· | ||||
| N2—H2 | 0.83 | 2.03 | 2.635 (3) | 129 |
| C3—H3···O1 | 0.93 | 2.39 | 2.712 (4) | 100 |
| C6—H6···N3 | 0.93 | 2.40 | 2.731 (4) | 101 |
| C6—H6···O4i | 0.93 | 2.59 | 3.444 (5) | 152 |
| C15—H15···O4i | 0.93 | 2.46 | 3.358 (4) | 161 |