Literature DB >> 30221209

Genome Stability during Cell Proliferation: A Systems Analysis of the Molecular Mechanisms Controlling Progression through the Eukaryotic Cell Cycle.

Béla Novák1, Frank Stefan Heldt1, John J Tyson2,3.   

Abstract

Well-nourished cells in a favorable environment (well supplied with growth factors, cytokines, and/or hormones and free from stresses, ionizing radiation, etc.) will grow, replicate their genome, and divide into two daughter cells, fully prepared to repeat the process. This cycle of DNA replication and division underlies all aspects of biological growth, reproduction, repair and development. As such, it is essential that the cell's genome be guarded against damage during the replication/division process, lest the error(s) be irrevocably passed down to all future generations of progeny. Hence, cell cycle progression is closely guarded against major sources of errors, in particular DNA damage and misalignment of replicated chromosomes on the mitotic spindle. In this review article we examine closely the molecular mechanisms that maintain genomic integrity during the cell division cycle, and we find an unexpected and intriguing arrangement of concatenated and nested bistable toggle switches. The topology of the network seems to play crucial roles in maintaining the stability of the genome during cell proliferation.

Entities:  

Year:  2018        PMID: 30221209      PMCID: PMC6136443          DOI: 10.1016/j.coisb.2018.02.004

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  46 in total

Review 1.  Regulation of DNA repair throughout the cell cycle.

Authors:  Dana Branzei; Marco Foiani
Journal:  Nat Rev Mol Cell Biol       Date:  2008-02-20       Impact factor: 94.444

Review 2.  Cohesin: its roles and mechanisms.

Authors:  Kim Nasmyth; Christian H Haering
Journal:  Annu Rev Genet       Date:  2009       Impact factor: 16.830

3.  Protein phosphatases and the regulation of mitosis.

Authors:  Francis A Barr; Paul R Elliott; Ulrike Gruneberg
Journal:  J Cell Sci       Date:  2011-07-15       Impact factor: 5.285

Review 4.  Viewpoint: putting the cell cycle in order.

Authors:  K Nasmyth
Journal:  Science       Date:  1996-12-06       Impact factor: 47.728

5.  Greatwall-phosphorylated Endosulfine is both an inhibitor and a substrate of PP2A-B55 heterotrimers.

Authors:  Byron C Williams; Joshua J Filter; Kristina A Blake-Hodek; Brian E Wadzinski; Nicholas J Fuda; David Shalloway; Michael L Goldberg
Journal:  Elife       Date:  2014-03-11       Impact factor: 8.140

6.  The proliferation-quiescence decision is controlled by a bifurcation in CDK2 activity at mitotic exit.

Authors:  Sabrina L Spencer; Steven D Cappell; Feng-Chiao Tsai; K Wesley Overton; Clifford L Wang; Tobias Meyer
Journal:  Cell       Date:  2013-09-26       Impact factor: 41.582

7.  Premature Sister Chromatid Separation Is Poorly Detected by the Spindle Assembly Checkpoint as a Result of System-Level Feedback.

Authors:  Mihailo Mirkovic; Lukas H Hutter; Béla Novák; Raquel A Oliveira
Journal:  Cell Rep       Date:  2015-10-08       Impact factor: 9.423

8.  DNA damage during S-phase mediates the proliferation-quiescence decision in the subsequent G1 via p21 expression.

Authors:  Alexis R Barr; Samuel Cooper; Frank S Heldt; Francesca Butera; Henriette Stoy; Jörg Mansfeld; Béla Novák; Chris Bakal
Journal:  Nat Commun       Date:  2017-03-20       Impact factor: 14.919

9.  Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos.

Authors:  B Novak; J J Tyson
Journal:  J Cell Sci       Date:  1993-12       Impact factor: 5.285

10.  Dependency of the spindle assembly checkpoint on Cdk1 renders the anaphase transition irreversible.

Authors:  Ahmed Rattani; P K Vinod; Jonathan Godwin; Kikuë Tachibana-Konwalski; Magda Wolna; Marcos Malumbres; Béla Novák; Kim Nasmyth
Journal:  Curr Biol       Date:  2014-02-27       Impact factor: 10.834

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  7 in total

Review 1.  A Dynamical Paradigm for Molecular Cell Biology.

Authors:  John J Tyson; Bela Novak
Journal:  Trends Cell Biol       Date:  2020-04-30       Impact factor: 20.808

Review 2.  Genome protection: histone H4 and beyond.

Authors:  Kundan Kumar; Romila Moirangthem; Rupinder Kaur
Journal:  Curr Genet       Date:  2020-06-17       Impact factor: 3.886

3.  A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint.

Authors:  Dávid Deritei; Jordan Rozum; Erzsébet Ravasz Regan; Réka Albert
Journal:  Sci Rep       Date:  2019-11-11       Impact factor: 4.379

4.  A distinct class of plant and animal viral proteins that disrupt mitosis by directly interrupting the mitotic entry switch Wee1-Cdc25-Cdk1.

Authors:  Huaibing Jin; Zhiqiang Du; Yanjing Zhang; Judit Antal; Zongliang Xia; Yan Wang; Yang Gao; Xiaoge Zhao; Xinyun Han; Yanjun Cheng; Qianhua Shen; Kunpu Zhang; Robert E Elder; Zsigmond Benko; Csaba Fenyvuesvolgyi; Ge Li; Dionne Rebello; Jing Li; Shilai Bao; Richard Y Zhao; Daowen Wang
Journal:  Sci Adv       Date:  2020-05-13       Impact factor: 14.136

5.  Dynamic bistable switches enhance robustness and accuracy of cell cycle transitions.

Authors:  Jan Rombouts; Lendert Gelens
Journal:  PLoS Comput Biol       Date:  2021-01-07       Impact factor: 4.475

6.  Autologous Platelet Rich Plasma (PRGF) Preserves Genomic Stability of Gingival Fibroblasts and Alveolar Osteoblasts after Long-Term Cell Culture.

Authors:  Eduardo Anitua; María de la Fuente; María Troya; Mar Zalduendo; Mohammad Hamdan Alkhraisat
Journal:  Dent J (Basel)       Date:  2022-09-14

7.  SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.

Authors:  Andreas Dräger; Tomáš Helikar; Matteo Barberis; Marc Birtwistle; Laurence Calzone; Claudine Chaouiya; Jan Hasenauer; Jonathan R Karr; Anna Niarakis; María Rodríguez Martínez; Julio Saez-Rodriguez; Juilee Thakar
Journal:  Bioinformatics       Date:  2021-06-24       Impact factor: 6.937

  7 in total

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