| Literature DB >> 30217946 |
Guangjun Jin1, Zhu Chen2, Jiancheng Zhang1, Jia Song1, Jun Shi1, Bingzhi Zhou3.
Abstract
Objective: To examine the association between brain natriuretic peptide (BNP) gene single nucleotide polymorphisms (SNPs) and chronic obstructive pulmonary disease (COPD) and COPD with pulmonary hypertension (PH) and to analyze its mechanism.Entities:
Keywords: Brain natriuretic peptide; Chronic obstructive pulmonary disease; Pulmonary hypertension; Single nucleotide polymorphism
Mesh:
Substances:
Year: 2018 PMID: 30217946 PMCID: PMC6167498 DOI: 10.1042/BSR20180905
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
PCR amplification information of the BNP gene rs198389, rs6668352, and rs198388 loci
| SNP loci | Primer sequence (5′ to 3′) | PCR mix | PCR procedure |
|---|---|---|---|
| rs198389 | Forward primer: AGACACAGACAAGTCCCCGT; | ddH2O: 13.8 μl; 10× PCR buffer: 2 μl; 10 mM dNTP mix: 1 μl; Primer Forward: 1 μl; Primer Reverse: 1 μl; Taq DNA Polymerase: 0.25 μl; genomic DNA: 1 μl | 95°C, 5 min (94°C, 45 s; 58°C, 45 s; 72°C, 30 s) 30 cycles; 72°C, 10 min |
| rs6668352 | Forward primer: TGTCACTCACTGGGTACAGC; | ||
| rs198388 | Forward primer: TTCTCCCAAGTGCCTCAAGT; |
Figure 1The sequencing results of the PCR product of the BNP gene
A, B, and C were wild-type (AA-type), heterozygous (AG-type), and homozygous mutants (GG-type) of the BNP gene rs198389 locus, respectively. D, E, and F were wild-type (GG type), heterozygous (GA type), and homozygous mutants (AA type) of the BNP gene rs6668352 locus, respectively. G, H, and I were wild-type (CC type), heterozygous (CT type), and mutant homozygous (TT type) of BNP gene rs198388 locus, respectively.
Comparison of the general clinical data amongst the three groups
| Index | Control group ( | COPD/PH− group ( | COPD/PH+ group ( | |
|---|---|---|---|---|
| Age (years) | 63.8 ± 5.3 (49, 76) | 64.2 ± 4.8 (45, 77) | 64.5 ± 5.2 (45, 77) | 0.597 |
| Gender [male, | 68 (54.4%) | 112 (54.6%) | 81 (60.4%) | 0.291 |
| Course (years) | – | 16.1 ± 5.8 (2, 27) | 16.4 ± 5.5 (5, 27) | 0.635 |
| BMI (kg/m2) | 22.8 ± 2.4 (18.9, 26.1) | 22.5 ± 2.4 (16.7, 27.5) | 22.4 ± 2.5 (17.8, 27.3) | 0.490 |
| Smoking (pack/year) | 31.6 ± 3.7 (24, 38) | 32.4 ± 4.1 (23, 39) | 32.0 ± 4.1 (23, 39) | 0.221 |
| FEV1/predicted value (%) | 80.8 ± 12.4 (53, 96) | 43.5 ± 4.7 (32, 63) | 43.6 ± 5.1 (30, 65) | <0.001 |
| FEV1/FVC (%) | 73.5 ± 13.4 (56, 86) | 55.6 ± 11.4 (43, 72) | 53.5 ± 12.1 (40, 76) | <0.001 |
| FVC (%) | 82.1 ± 20.4 (65, 97) | 49.2 ± 17.5 (32, 61) | 40.5 ± 16.7 (26, 58) | <0.001 |
| PaO2 (mmHg) | 88.0 ± 6.1 (76.5, 98.5) | 62.6 ± 8.3 (54.2, 73.6) | 54.5 ± 4.0 (51.2, 59.7) | <0.001 |
| PaCO2 (mmHg) | 44.2 ± 4.2 (36.8, 52.3) | 60.8 ± 7.6 (51.2, 66.7) | 66.4 ± 7.6 (58.4, 72.4) | <0.001 |
| SpO2 decreased by 3% during exercise | 27 (21.6%) | 123 (48.3%) | 105 (85.1%) | <0.001 |
| D-dimer (μg/l) | 307.5 ± 205.4 (102.5, 495.4) | 498.4 ± 207.6 (208.6, 603.7) | 651.7 ± 325.6 (422.8, 982.7) | <0.001 |
| 6MWT/m | 413.8 ± 45.3 (375.8, 462.1) | 312.6 ± 39.8 (264.4, 345.7) | 250.5 ± 36.5 (214.5, 295.6) | <0.001 |
| DLCO/% | 88.5 ± 12.3 (70.5, 95.8) | 56.5 ± 7.8 (44.8, 72.3) | 55.7 ± 7.6 (45.4, 69.8) | <0.001 |
| mPAP/mmHg | 20.1 ± 2.5 (17.9, 23.1) | 23.5 ± 2.7 (19.2, 24.9) | 36.7 ± 5.7 (31.6, 43.8) | <0.001 |
| Pulmonary vascular resistance (WU) | 1.1 ± 0.3 (0.9, 1.4) | 2.4 ± 0.5 (2.2, 2.7) | 4.6 ± 0.7 (4.2, 4.9) | <0.001 |
| Cardiac output (l/min) | 5.9 ± 1.1 (5.1, 6.8) | 6.5 ± 1.2 (5.7, 7.6) | 6.1 ± 1.4 (5.5, 7.7) | 0.764 |
| Cardiac index (l/min/m2) | 2.5 ± 0.9 (2.0, 3.9) | 3.7 ± 1.4 (2.9, 4.9) | 3.4 ± 1.6 (2.7, 5.3) | 0.217 |
| GFR (ml/min × 1.73 m2) | 87.6 ± 4.1 (48.4, 102.3) | 78.5 ± 3.6 (45.5, 99.6) | 62.5 ± 3.1 (37.1, 81.4) | 0.007 |
| RBF (ml/min × 1.73 m2) | 1054.6 ± 65.2 (706.9, 135.4) | 851.2 ± 42.3 (760.1, 991.3) | 653.8 ± 33.9 (583.4, 701.4) | <0.001 |
FVC (minimum, maximum). Abbreviations: GFR, glomerular filtration rate; 6MWT, 6 min walking tests; RBF, renal blood flow.
Genotypic distributions of the rs198389, rs6668352, and rs198388 loci in the BNP gene in the control group and the COPD group
| SNPs | Control group ( | COPD group ( | OR (95% CI) | OR | ||
|---|---|---|---|---|---|---|
| rs198389 genotype | ||||||
| AA | 69 (55.2%) | 141 (41.6%) | 1.00 | |||
| AG | 40 (32.0%) | 108 (31.9%) | 0.238 | 1.321 (0.811–2.157) | 0.287 | 1.087 (0.937–1.247) |
| GG | 16 (12.8%) | 90 (26.5%) | 0.005 | 2.753 (1.450–5.282) | 0.001 | 1.265 (1.100–1.407) |
| Allele | ||||||
| A | 178 (71.2%) | 390 (57.5%) | 1.00 | |||
| G | 72 (28.8%) | 288 (42.5%) | <0.001 | 1.826 (1.319–2.529) | <0.001 | 1.165 (1.076–1.254) |
| rs6668352 genotype | ||||||
| GG | 71 (56.8%) | 137 (40.4%) | 1.00 | |||
| GA | 41 (32.8%) | 112 (33.0%) | 0.136 | 1.416 (0.873–2.299) | 0.169 | 1.111 (0.958–1.276) |
| AA | 13 (10.4%) | 90 (26.5%) | <0.001 | 3.588 (1.804–7.248) | <0.001 | 1.327 (1.158–1.463) |
| Allele | ||||||
| G | 183 (73.2%) | 386 (56.9%) | 1.00 | |||
| A | 67 (26.8%) | 292 (43.1%) | <0.001 | 2.066 (1.485–2.878) | <0.001 | 1.199 (1.108–1.288) |
| rs198388 genotype | ||||||
| CC | 68 (54.4%) | 147 (43.4%) | 1.00 | |||
| CT | 45 (36.0%) | 117 (34.5%) | 0.419 | 1.203 (0.750–1.931) | 0.488 | 1.056 (0.916–1.208) |
| TT | 12 (9.6%) | 75 (22.1%) | 0.001 | 2.891 (1.414–6.017) | 0.002 | 1.261 (1.091–1.396) |
| Allele | ||||||
| C | 181 (72.4%) | 411 (60.6%) | 1.00 | |||
| T | 69 (27.6%) | 267 (39.4%) | <0.001 | 1.704 (1.226–2.371) | 0.001 | 1.145 (1.055–1.232) |
Corrected according to age, sex, BMI, smoking index, and other clinical parameters.
Genotypic distributions of the rs198389, rs6668352, and rs198388 loci in the BNP gene in the COPD/PH− group and COPD/PH+ group
| SNPs | COPD/PH− group ( | COPD/PH+ group ( | OR (95% CI) | OR | ||
|---|---|---|---|---|---|---|
| rs198389 genotype | ||||||
| AA | 105 (51.2%) | 36 (26.9%) | 1.00 | |||
| AG | 84 (41.0%) | 24 (17.9%) | 0.545 | 0.833 (0.442–1.566) | 0.649 | 0.870 (0.532–1.403) |
| GG | 16 (7.8%) | 74 (55.2%) | <0.001 | 13.490 (6.661–27.666) | <0.001 | 3.220 (2.444–4.094) |
| Allele | ||||||
| A | 294 (71.7%) | 96 (35.8%) | 1.00 | |||
| G | 116 (28.3%) | 172 (64.2%) | <0.001 | 4.541 (3.223–6.403) | <0.001 | 2.426 (1.992–2.955) |
| rs6668352 genotype | ||||||
| GG | 106 (51.7%) | 31 (23.1%) | 1.00 | |||
| GA | 75 (36.6%) | 37 (27.6%) | 0.067 | 1.687 (0.927–3.074) | 0.091 | 1.460 (0.946–2.258) |
| AA | 24 (11.7%) | 66 (49.3%) | <0.001 | 9.403 (4.871–18.302) | <0.001 | 3.241 (2.342–4.426) |
| Allele | ||||||
| G | 287 (70.0%) | 99 (36.9%) | 1.00 | |||
| A | 123 (30.0%) | 169 (63.1%) | <0.001 | 3.983 (2.838–5.594) | <0.001 | 2.257 (1.853–2.747) |
| rs198388 genotype | ||||||
| CC | 100 (48.8%) | 47 (35.1%) | 1.00 | |||
| CT | 89 (43.4%) | 28 (20.9%) | 0.150 | 0.669 (0.373–1.199) | 0.193 | 0.748 (0.485–1.139) |
| TT | 16 (7.8%) | 59 (44.0%) | <0.001 | 7.846 (3.908–15.928) | <0.001 | 2.460 (1.890–3.063) |
| Allele | ||||||
| C | 289 (70.5%) | 122 (45.5%) | 1.00 | |||
| T | 121 (29.5%) | 146 (54.5%) | <0.001 | 2.858 (2.048–3.991) | <0.001 | 1.842 (1.524–2.219) |
Corrected according to age, sex, BMI, smoking index, and other clinical parameters.
Comparison of the plasma BNP, Fbg, and Apelin content in the three groups ( ± s)
| Plasma parameters | Control group ( | COPD/PH− group ( | COPD/PH+ group ( | |
|---|---|---|---|---|
| BNP (ng/l) | 28.1 ± 9.8 | 158.6 ± 23.0 | 220.2 ± 18.9 | <0.001 |
| Fbg (g/l) | 2.5 ± 0.5 | 4.2 ± 0.5 | 5.4 ± 0.8 | <0.001 |
| Apelin (ng/l) | 90.5 ± 8.4 | 43.9 ± 4.6 | 29.4 ± 6.2 | <0.001 |
Figure 2Comparison of plasma BNP, Fbg, and Apelin protein content in subjects with each genotype of BNP gene rs198389, rs6668352, and rs198388 loci
***P<0.001.
Figure 3Comparison of plasma IL-6, IL-8 expression levels in subjects with genotypes of the BNP gene rs198389, rs6668352, and rs198388 loci
***P<0.001; **P<0.01, *P<0.05.