| Literature DB >> 30214306 |
Zhigang Cui1,2,3, Min Gao3, Zhihua Yin3, Lei Yan1, Lei Cui1.
Abstract
OBJECTIVE: To explore the relationship between single-nucleotide polymorphisms (SNPs) in one of the long noncoding RNA (lncRNA), cancer susceptibility candidate 8 (CASC8) gene and the risk of cancer.Entities:
Keywords: CASC8; cancer; lncRNA; meta-analysis; single-nucleotide polymorphism
Year: 2018 PMID: 30214306 PMCID: PMC6124472 DOI: 10.2147/CMAR.S170783
Source DB: PubMed Journal: Cancer Manag Res ISSN: 1179-1322 Impact factor: 3.989
Figure 1Flow diagram of study identification with criteria in the meta-analysis.
Characteristics of the studies included in this meta-analysis
| References | Year | Ethnicity | Source | Cancer | Genotying method | Case/control | Genotyping distribution
| HWE | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||||||
| Rs10505477 (T>C) | TT | TC | CC | TT | TC | CC | |||||||
| Hashemi et al | 2016 | Caucasian | PB | ALL | PCR-RELP | 110/120 | 40 | 43 | 27 | 35 | 56 | 29 | 0.481 |
| Hu et al | 2016 | Asian | HB | LC | MassARRAY | 484/210 | 152 | 243 | 89 | 63 | 101 | 46 | 0.645 |
| Zhou et al | 2014 | Asian | HB | GC | MassARRAY | 242/227 | 52 | 120 | 70 | 45 | 107 | 75 | 0.542 |
| Haerian et al | 2014 | Caucasian | HB | CRC | Taqman | 380/335 | 88 | 182 | 110 | 58 | 182 | 95 | 0.555 |
| Hutter et al | 2010 | Caucasian | PB | CRC | MassARRAY | 1,453/1,797 | 405 | 741 | 307 | 461 | 912 | 424 | 0.512 |
| Hutter et al | 2010 | Caucasian | PB | CRC | MassARRAY | 636/646 | 169 | 323 | 144 | 156 | 328 | 162 | 0.692 |
| Curtin et al | 2009 | Caucasian | PB | CRC | SNPlex | 1,071/1,040 | 304 | 544 | 223 | 273 | 519 | 248 | 0.965 |
| Schafmayer et al | 2008 | Caucasian | PB | CRC | SNPlex | 2,713/2,718 | 780 | 1,359 | 574 | 638 | 1,374 | 706 | 0.543 |
| Zanke et al | 2007 | Caucasian | PB | CRC | Taqman | 761/749 | 222 | 372 | 167 | 195 | 365 | 189 | 0.489 |
| Zanke et al | 2007 | Caucasian | PB | CRC | Taqman | 1,415/1,656 | 395 | 696 | 324 | 384 | 842 | 430 | 0.472 |
| Zanke et al | 2007 | Caucasian | PB | CRC | Taqman | 2,809/2,912 | 836 | 1,410 | 563 | 755 | 1,444 | 713 | 0.665 |
| Zanke et al | 2007 | Caucasian | PB | CRC | Taqman | 1,859/1,882 | 579 | 890 | 390 | 487 | 913 | 482 | 0.197 |
| Zanke et al | 2007 | Caucasian | PB | CRC | Taqman | 445/366 | 129 | 213 | 103 | 105 | 176 | 85 | 0.499 |
| Gruber et al | 2007 | Asian | PB | CRC | GeneChip | 1,860/1,936 | 535 | 936 | 389 | 531 | 932 | 473 | 0.110 |
| Rs7837328 (G>A) | GG | GA | AA | GG | GA | AA | |||||||
| Yang et al | 2014 | Asian | HB | CRC | Taqman | 90/132 | 26 | 37 | 27 | 49 | 61 | 22 | 0.684 |
| Zhang et al | 2014 | Asian | PB | PCa | PCR | 388/344 | 122 | 210 | 56 | 115 | 173 | 56 | 0.501 |
| San Francisco et al | 2013 | Caucasian | HB | pCa | Taqman | 83/21 | 29 | 45 | 9 | 9 | 10 | 2 | 0.743 |
| Cui et al | 2010 | Asian | PB | CRC | Illumina | 6,163/4,494 | 2,487 | 2,886 | 790 | 2,040 | 1,970 | 484 | 0.796 |
| Zheng et al | 2010 | Asian | PB | pCa | MassARRAY | 284/145 | 99 | 133 | 52 | 59 | 64 | 22 | 0.502 |
| Salinas et al | 2008 | Caucasian | PB | pCa | SNPlex | 1,258/1,239 | 387 | 639 | 232 | 451 | 590 | 198 | 0.828 |
Notes: Hardy–Weinberg equilibrium test was conducted on the allele frequency of the control group. The study population were regarded as coming from the same Mendelian genetic group when P>0.05.
Abbreviations: HB, hospital-based; PB, population-based; LC, lung cancer; GC, gastric cancer; CRC, colorectal cancer; EOC, epithelial ovarian cancer; pCa, prostate cancer.
Relationship between SNP of rs10505477 and cancer susceptibility
| SNP | No. | Pooled OR (95% CI) | Phet | Model | ||
|---|---|---|---|---|---|---|
| TC vs TT | 14 | 0.876 (0.832–0.923) | <0.001 | 0.617 | 0.0 | F |
| CC vs TT | 14 | 0.748 (0.703–0.795) | <0.001 | 0.801 | 0.0 | F |
| TC+CC vs TT | 14 | 0.834 (0.794–0.875) | <0.001 | 0.609 | 0.0 | F |
| CC vs TC+TT | 14 | 0.817 (0.776–0.860) | <0.001 | 0.888 | 0.0 | F |
| C vs T | 14 | 0.866 (0.840–0.893) | <0.001 | 0.763 | 0.0 | F |
Notes:
P-value of the heterogeneity test.
The fixed effects model was used.
The subgroup analysis of rs10505477 and cancer susceptibility
| Subgroup | No. | Homozygote
| Heterozygote
| Dominant model
| Recessive model
| Additive model
| |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | |||||||
| Ethnicity | 14 | ||||||||||
| Caucasian | 11 | 0.737 (0.689–0.788) | <0.001 | 0.857 (0.810–0.906) | <0.001 | 0.817 (0.775–0.862) | <0.001 | 0.817 (0.772–0.864) | <0.001 | 0.859 (0.831–0.888) | <0.001 |
| Asian | 3 | 0.814 (0.694–0.954) | 0.011 | 0.995 (0.870–1.137) | 0.938 | 0.933 (0.823–1.059) | 0.284 | 0.817 (0.715–0.934) | 0.003 | 0.905 (0.836–0.981) | 0.015 |
| Source | 14 | ||||||||||
| PB | 11 | 0.746 (0.700–0.794) | <0.001 | 0.877 (0.832–0.925) | 0.001 | 0.834 (0.793–0.877) | <0.001 | 0.812 (0.770–0.856) | <0.001 | 0.864 (0.837–0.892) | <0.001 |
| HB | 3 | 0.788 (0.602–1.031) | 0.082 | 0.852 (0.674–1.077) | 0.179 | 0.833 (0.668–1.040) | 0.107 | 0.900 (0.728–1.113) | 0.333 | 0.899 (0.787–1.026) | 0.115 |
| Method | 14 | ||||||||||
| Taqman | 6 | 0.729 (0.667–0.797) | <0.001 | 0.848 (0.787–0.914) | <0.001 | 0.809 (0.753–0.868) | <0.001 | 0.815 (0.757–0.878) | <0.001 | 0.854 (0.817–0.893) | <0.001 |
| MassARRAY | 4 | 0.820 (0.705–0.953) | 0.010 | 0.932 (0.821–1.058) | 0.279 | 0.896 (0.896–1.009) | 0.071 | 0.858 (0.757–0.973) | 0.017 | 0.907 (0.842–0.978) | 0.011 |
| tagSNP | 1 | - | - | - | - | - | - | - | - | - | - |
| SNPlex | 2 | 0.702 (0.617–0.799) | <0.001 | 0.845 (0.758–0.942) | 0.002 | 0.812 (0.692–0.953) | 0.011 | 0.785 (0.705–0.873) | 0.947 | 0.840 (0.788–0.895) | <0.001 |
| Genechip | 1 | - | - | - | - | - | - | - | - | - | - |
| Cancer | 14 | ||||||||||
| CRC | 11 | 0.745 (0.700–0.794) | <0.001 | 0.875 (0.829–0.922) | <0.001 | 0.832 (0.791–0.875) | <0.001 | 0.816 (0.774–0.860) | <0.001 | 0.865 (0.838–0.892) | <0.001 |
| ALL | 1 | - | - | - | - | - | - | - | - | - | - |
| LC | 1 | - | - | - | - | - | - | - | - | - | - |
| GC | 1 | - | - | - | - | - | - | - | - | - | - |
Relationship between SNP of rs7837328 and cancer susceptibility
| SNP | No. | Pooled OR (95% CI) | Phet | Model | ||
|---|---|---|---|---|---|---|
| GA vs GG | 6 | 1.209 (1.127–1.298) | <0.001 | 0.993 | 0.0 | F |
| AA vs GG | 6 | 1.336 (1.202–1.484) | <0.001 | 0.478 | 0.0 | F |
| GA+AA vs GG | 6 | 1.236 (1.156–1.322) | <0.001 | 0.941 | 0.0 | F |
| AA vs GA+GG | 6 | 1.204 (1.092–1.328) | <0.001 | 0.335 | 12.5 | F |
| A vs G | 6 | 1.169 (1.114–1.227) | <0.001 | 0.514 | 0.0 | F |
Note:
Heterogeneity test;
the fixed effects model.
The subgroup analysis of rs7837328 and cancer susceptibility
| Subgroup | No. | Homozygote
| Heterozygote
| Dominant model
| Recessive model
| Additive model
| |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | |||||||
| Ethnicity | 6 | ||||||||||
| Caucasian | 2 | 1.366 (1.084–1.721) | 0.008 | 1.266 (1.064–1.506) | 0.008 | 1.291 (1.096–1.521) | 0.002 | 1.188 (0.966–1.461) | 0.102 | 1.182 (1.058–1.321) | 0.003 |
| Asian | 4 | 1.328 (1.180–1.495) | <0.001 | 1.199 (1.109–1.295) | <0.001 | 1.226 (1.139–1.319) | <0.001 | 1.209 (1.082–1.351) | 0.001 | 1.166 (1.105–1.230) | <0.001 |
| Source | 6 | ||||||||||
| Population-based | 4 | 1.320 (1.187–1.469) | <0.001 | 1.210 (1.126–1.299) | <0.001 | 1.233 (1.152–1.319) | <0.001 | 1.188 (1.076–1.312) | 0.001 | 1.163 (1.108–1.222) | <0.001 |
| Hospital-based | 2 | 2.126 (1.077–4.195) | 0.030 | 1.207 (0.708–2.059) | 0.489 | 1.439 (0.876–2.363) | 0.151 | 1.960 (1.073–3.577) | 0.028 | 1.468 (1.047–2.057) | 0.026 |
| Method | 6 | ||||||||||
| Taqman | 2 | 2.126 (1.077–4.195) | 0.030 | 1.207 (0.708–2.059) | 0.489 | 1.439 (0.876–2.363) | 0.151 | 1.960 (1.073–1.073) | 0.028 | 1.468 (1.047–2.057) | 0.026 |
| Illumina | 1 | - | - | - | - | - | - | - | - | - | - |
| PCR | 1 | - | - | - | - | - | - | - | - | - | - |
| SNPlex | 1 | - | - | - | - | - | - | - | - | - | - |
| MassARRAY | 1 | - | - | - | - | - | - | - | - | - | - |
| Cancer | 6 | ||||||||||
| CRC | 2 | 1.360 (1.200–1.542) | <0.001 | 1.201 (1.107–1.302) | <0.001 | 1.232 (1.141–1.331) | <0.001 | 1.474 (0.873–2.488) | 0.146 | 1.260 (0.989–1.604) | 0.061 |
| pCa | 4 | 1.279 (1.054–1.553) | 0.013 | 1.238 (1.071–1.430) | 0.004 | 1.249 (1.090–1.432) | 0.001 | 1.127 (0.947–1.341) | 0.178 | 1.147 (1.045–1.258) | 0.004 |