Literature DB >> 30205045

The Genomic Landscape of Endocrine-Resistant Advanced Breast Cancers.

Pedram Razavi1, Matthew T Chang2, Guotai Xu3, Chaitanya Bandlamudi4, Dara S Ross5, Neil Vasan1, Yanyan Cai5, Craig M Bielski4, Mark T A Donoghue4, Philip Jonsson2, Alexander Penson2, Ronglai Shen6, Fresia Pareja5, Ritika Kundra4, Sumit Middha5, Michael L Cheng7, Ahmet Zehir5, Cyriac Kandoth4, Ruchi Patel4, Kety Huberman4, Lillian M Smyth7, Komal Jhaveri7, Shanu Modi7, Tiffany A Traina7, Chau Dang7, Wen Zhang7, Britta Weigelt5, Bob T Li7, Marc Ladanyi8, David M Hyman7, Nikolaus Schultz9, Mark E Robson7, Clifford Hudis7, Edi Brogi5, Agnes Viale4, Larry Norton7, Maura N Dickler7, Michael F Berger10, Christine A Iacobuzio-Donahue8, Sarat Chandarlapaty1, Maurizio Scaltriti8, Jorge S Reis-Filho8, David B Solit11, Barry S Taylor12, José Baselga13.   

Abstract

We integrated the genomic sequencing of 1,918 breast cancers, including 1,501 hormone receptor-positive tumors, with detailed clinical information and treatment outcomes. In 692 tumors previously exposed to hormonal therapy, we identified an increased number of alterations in genes involved in the mitogen-activated protein kinase (MAPK) pathway and in the estrogen receptor transcriptional machinery. Activating ERBB2 mutations and NF1 loss-of-function mutations were more than twice as common in endocrine resistant tumors. Alterations in other MAPK pathway genes (EGFR, KRAS, among others) and estrogen receptor transcriptional regulators (MYC, CTCF, FOXA1, and TBX3) were also enriched. Altogether, these alterations were present in 22% of tumors, mutually exclusive with ESR1 mutations, and associated with a shorter duration of response to subsequent hormonal therapies.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  breast cancer; cancer genomics; endocrine resistance; integrative genomics analysis; metastasis

Mesh:

Substances:

Year:  2018        PMID: 30205045      PMCID: PMC6327853          DOI: 10.1016/j.ccell.2018.08.008

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  63 in total

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Authors:  Keith T Flaherty; Caroline Robert; Peter Hersey; Paul Nathan; Claus Garbe; Mohammed Milhem; Lev V Demidov; Jessica C Hassel; Piotr Rutkowski; Peter Mohr; Reinhard Dummer; Uwe Trefzer; James M G Larkin; Jochen Utikal; Brigitte Dreno; Marta Nyakas; Mark R Middleton; Jürgen C Becker; Michelle Casey; Laurie J Sherman; Frank S Wu; Daniele Ouellet; Anne-Marie Martin; Kiran Patel; Dirk Schadendorf
Journal:  N Engl J Med       Date:  2012-06-04       Impact factor: 91.245

2.  FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing.

Authors:  Ronglai Shen; Venkatraman E Seshan
Journal:  Nucleic Acids Res       Date:  2016-06-07       Impact factor: 16.971

3.  Lapatinib combined with letrozole versus letrozole and placebo as first-line therapy for postmenopausal hormone receptor-positive metastatic breast cancer.

Authors:  Stephen Johnston; John Pippen; Xavier Pivot; Mikhail Lichinitser; Saeed Sadeghi; Veronique Dieras; Henry Leonidas Gomez; Gilles Romieu; Alexey Manikhas; M John Kennedy; Michael F Press; Julie Maltzman; Allison Florance; Lisa O'Rourke; Cristina Oliva; Steven Stein; Mark Pegram
Journal:  J Clin Oncol       Date:  2009-09-28       Impact factor: 44.544

4.  A Phase Ib Study of Alpelisib (BYL719), a PI3Kα-Specific Inhibitor, with Letrozole in ER+/HER2- Metastatic Breast Cancer.

Authors:  Ingrid A Mayer; Vandana G Abramson; Luigi Formisano; Justin M Balko; Mónica V Estrada; Melinda E Sanders; Dejan Juric; David Solit; Michael F Berger; Helen H Won; Yisheng Li; Lewis C Cantley; Eric Winer; Carlos L Arteaga
Journal:  Clin Cancer Res       Date:  2016-04-28       Impact factor: 12.531

5.  Genomic Characterization of Brain Metastases Reveals Branched Evolution and Potential Therapeutic Targets.

Authors:  Priscilla K Brastianos; Scott L Carter; Gad Getz; William C Hahn; Sandro Santagata; Daniel P Cahill; Amaro Taylor-Weiner; Robert T Jones; Eliezer M Van Allen; Michael S Lawrence; Peleg M Horowitz; Kristian Cibulskis; Keith L Ligon; Josep Tabernero; Joan Seoane; Elena Martinez-Saez; William T Curry; Ian F Dunn; Sun Ha Paek; Sung-Hye Park; Aaron McKenna; Aaron Chevalier; Mara Rosenberg; Frederick G Barker; Corey M Gill; Paul Van Hummelen; Aaron R Thorner; Bruce E Johnson; Mai P Hoang; Toni K Choueiri; Sabina Signoretti; Carrie Sougnez; Michael S Rabin; Nancy U Lin; Eric P Winer; Anat Stemmer-Rachamimov; Matthew Meyerson; Levi Garraway; Stacey Gabriel; Eric S Lander; Rameen Beroukhim; Tracy T Batchelor; Jose Baselga; David N Louis
Journal:  Cancer Discov       Date:  2015-09-26       Impact factor: 39.397

6.  Analysis of ESR1 mutation in circulating tumor DNA demonstrates evolution during therapy for metastatic breast cancer.

Authors:  Gaia Schiavon; Sarah Hrebien; Isaac Garcia-Murillas; Rosalind J Cutts; Alex Pearson; Noelia Tarazona; Kerry Fenwick; Iwanka Kozarewa; Elena Lopez-Knowles; Ricardo Ribas; Ashutosh Nerurkar; Peter Osin; Sarat Chandarlapaty; Lesley-Ann Martin; Mitch Dowsett; Ian E Smith; Nicholas C Turner
Journal:  Sci Transl Med       Date:  2015-11-11       Impact factor: 17.956

7.  The landscape of cancer genes and mutational processes in breast cancer.

Authors:  Philip J Stephens; Patrick S Tarpey; Helen Davies; Peter Van Loo; Chris Greenman; David C Wedge; Serena Nik-Zainal; Sancha Martin; Ignacio Varela; Graham R Bignell; Lucy R Yates; Elli Papaemmanuil; David Beare; Adam Butler; Angela Cheverton; John Gamble; Jonathan Hinton; Mingming Jia; Alagu Jayakumar; David Jones; Calli Latimer; King Wai Lau; Stuart McLaren; David J McBride; Andrew Menzies; Laura Mudie; Keiran Raine; Roland Rad; Michael Spencer Chapman; Jon Teague; Douglas Easton; Anita Langerød; Ming Ta Michael Lee; Chen-Yang Shen; Benita Tan Kiat Tee; Bernice Wong Huimin; Annegien Broeks; Ana Cristina Vargas; Gulisa Turashvili; John Martens; Aquila Fatima; Penelope Miron; Suet-Feung Chin; Gilles Thomas; Sandrine Boyault; Odette Mariani; Sunil R Lakhani; Marc van de Vijver; Laura van 't Veer; John Foekens; Christine Desmedt; Christos Sotiriou; Andrew Tutt; Carlos Caldas; Jorge S Reis-Filho; Samuel A J R Aparicio; Anne Vincent Salomon; Anne-Lise Børresen-Dale; Andrea L Richardson; Peter J Campbell; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2012-05-16       Impact factor: 49.962

8.  Lapatinib plus letrozole as first-line therapy for HER-2+ hormone receptor-positive metastatic breast cancer.

Authors:  Lee S Schwartzberg; Lee S Schwarzberg; Sandra X Franco; Allison Florance; Lisa O'Rourke; Julie Maltzman; Stephen Johnston
Journal:  Oncologist       Date:  2010-02-15

9.  The Subclonal Architecture of Metastatic Breast Cancer: Results from a Prospective Community-Based Rapid Autopsy Program "CASCADE".

Authors:  Peter Savas; Zhi Ling Teo; Christophe Lefevre; Christoffer Flensburg; Franco Caramia; Kathryn Alsop; Mariam Mansour; Prudence A Francis; Heather A Thorne; Maria Joao Silva; Nnennaya Kanu; Michelle Dietzen; Andrew Rowan; Maik Kschischo; Stephen Fox; David D Bowtell; Sarah-Jane Dawson; Terence P Speed; Charles Swanton; Sherene Loi
Journal:  PLoS Med       Date:  2016-12-27       Impact factor: 11.069

10.  Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.

Authors:  Matthew T Chang; Saurabh Asthana; Sizhi Paul Gao; Byron H Lee; Jocelyn S Chapman; Cyriac Kandoth; JianJiong Gao; Nicholas D Socci; David B Solit; Adam B Olshen; Nikolaus Schultz; Barry S Taylor
Journal:  Nat Biotechnol       Date:  2015-11-30       Impact factor: 54.908

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  251 in total

1.  Loss of the FAT1 Tumor Suppressor Promotes Resistance to CDK4/6 Inhibitors via the Hippo Pathway.

Authors:  Zhiqiang Li; Pedram Razavi; Qing Li; Weiyi Toy; Bo Liu; Christina Ping; Wilson Hsieh; Francisco Sanchez-Vega; David N Brown; Arnaud F Da Cruz Paula; Luc Morris; Pier Selenica; Emily Eichenberger; Ronglai Shen; Nikolaus Schultz; Neal Rosen; Maurizio Scaltriti; Edi Brogi; Jose Baselga; Jorge S Reis-Filho; Sarat Chandarlapaty
Journal:  Cancer Cell       Date:  2018-12-10       Impact factor: 31.743

2.  Cyclin E mRNA: Assessing Cyclin-Dependent Kinase (CDK) Activation State to Elucidate Breast Cancer Resistance to CDK4/6 Inhibitors.

Authors:  Sarat Chandarlapaty; Pedram Razavi
Journal:  J Clin Oncol       Date:  2019-03-28       Impact factor: 44.544

Review 3.  FGFR4: A promising therapeutic target for breast cancer and other solid tumors.

Authors:  Kevin M Levine; Kai Ding; Lyuqin Chen; Steffi Oesterreich
Journal:  Pharmacol Ther       Date:  2020-05-31       Impact factor: 12.310

4.  Characteristics and Outcome of AKT1 E17K-Mutant Breast Cancer Defined through AACR Project GENIE, a Clinicogenomic Registry.

Authors:  Lillian M Smyth; Qin Zhou; Bastien Nguyen; Celeste Yu; Eva M Lepisto; Monica Arnedos; Michael J Hasset; Michele L Lenoue-Newton; Natalie Blauvelt; Semih Dogan; Christine M Micheel; Chetna Wathoo; Hugo Horlings; Jan Hudecek; Benjamin E Gross; Ritika Kundra; Shawn M Sweeney; JianJiong Gao; Nikolaus Schultz; Andrew Zarski; Stuart M Gardos; Jocelyn Lee; Seth Sheffler-Collins; Ben H Park; Charles L Sawyers; Fabrice André; Mia Levy; Funda Meric-Bernstam; Philippe L Bedard; Alexia Iasonos; Deborah Schrag; David M Hyman
Journal:  Cancer Discov       Date:  2020-01-10       Impact factor: 39.397

5.  Double PIK3CA mutations in cis increase oncogenicity and sensitivity to PI3Kα inhibitors.

Authors:  Pedram Razavi; Jared L Johnson; Hong Shao; Neil Vasan; Hardik Shah; Alesia Antoine; Erik Ladewig; Alexander Gorelick; Ting-Yu Lin; Eneda Toska; Guotai Xu; Abiha Kazmi; Matthew T Chang; Barry S Taylor; Maura N Dickler; Komal Jhaveri; Sarat Chandarlapaty; Raul Rabadan; Ed Reznik; Melissa L Smith; Robert Sebra; Frauke Schimmoller; Timothy R Wilson; Lori S Friedman; Lewis C Cantley; Maurizio Scaltriti; José Baselga
Journal:  Science       Date:  2019-11-08       Impact factor: 47.728

6.  Tumor Mutational Burden and PTEN Alterations as Molecular Correlates of Response to PD-1/L1 Blockade in Metastatic Triple-Negative Breast Cancer.

Authors:  Romualdo Barroso-Sousa; Tanya E Keenan; Eliezer M Van Allen; Sara M Tolaney; Sonia Pernas; Pedro Exman; Esha Jain; Ana C Garrido-Castro; Melissa Hughes; Brittany Bychkovsky; Renato Umeton; Janet L Files; Neal I Lindeman; Laura E MacConaill; F Stephen Hodi; Ian E Krop; Deborah Dillon; Eric P Winer; Nikhil Wagle; Nancy U Lin; Elizabeth A Mittendorf
Journal:  Clin Cancer Res       Date:  2020-02-04       Impact factor: 12.531

Review 7.  Mechanisms of resistance to estrogen receptor modulators in ER+/HER2- advanced breast cancer.

Authors:  Jin Zhang; Qianying Wang; Qing Wang; Jiangran Cao; Jiafu Sun; Zhengmao Zhu
Journal:  Cell Mol Life Sci       Date:  2019-08-30       Impact factor: 9.261

8.  FGFR1 Amplification Mediates Endocrine Resistance but Retains TORC Sensitivity in Metastatic Hormone Receptor-Positive (HR+) Breast Cancer.

Authors:  Joshua Z Drago; Luigi Formisano; Carlos L Arteaga; Aditya Bardia; Dejan Juric; Andrzej Niemierko; Alberto Servetto; Seth A Wander; Laura M Spring; Neelima Vidula; Jerry Younger; Jeffrey Peppercorn; Megan Yuen; Giuliana Malvarosa; Dennis Sgroi; Steven J Isakoff; Beverly Moy; Leif W Ellisen; A John Iafrate
Journal:  Clin Cancer Res       Date:  2019-08-01       Impact factor: 12.531

9.  The 3D genomic landscape of differential response to EGFR/HER2 inhibition in endocrine-resistant breast cancer cells.

Authors:  Yini Yang; Lavanya Choppavarapu; Kun Fang; Alireza S Naeini; Bakhtiyor Nosirov; Jingwei Li; Ke Yang; Zhijing He; Yufan Zhou; Rachel Schiff; Rong Li; Yanfen Hu; Junbai Wang; Victor X Jin
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-09-19       Impact factor: 4.490

10.  A phase II study of efficacy, toxicity, and the potential impact of genomic alterations on response to eribulin mesylate in combination with trastuzumab and pertuzumab in women with human epidermal growth factor receptor 2 (HER2)+ metastatic breast cancer.

Authors:  Nikhil Wagle; Rachel A Freedman; Sara M Balch; Ines Vaz-Luis; Tianyu Li; Nabihah Tayob; Esha Jain; Karla Helvie; Jorge E Buendia-Buendia; Erin Shannon; Steven J Isakoff; Nadine M Tung; Ian E Krop; Nancy U Lin
Journal:  Breast Cancer Res Treat       Date:  2021-07-24       Impact factor: 4.872

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