Literature DB >> 30201837

Caenorhabditis elegans and the network control framework-FAQs.

Emma K Towlson1, Petra E Vértes2, Gang Yan1,3, Yee Lian Chew4, Denise S Walker4, William R Schafer4, Albert-László Barabási5,6,7,8.   

Abstract

Control is essential to the functioning of any neural system. Indeed, under healthy conditions the brain must be able to continuously maintain a tight functional control between the system's inputs and outputs. One may therefore hypothesize that the brain's wiring is predetermined by the need to maintain control across multiple scales, maintaining the stability of key internal variables, and producing behaviour in response to environmental cues. Recent advances in network control have offered a powerful mathematical framework to explore the structure-function relationship in complex biological, social and technological networks, and are beginning to yield important and precise insights on neuronal systems. The network control paradigm promises a predictive, quantitative framework to unite the distinct datasets necessary to fully describe a nervous system, and provide mechanistic explanations for the observed structure and function relationships. Here, we provide a thorough review of the network control framework as applied to Caenorhabditis elegans (Yan et al. 2017 Nature550, 519-523. (doi:10.1038/nature24056)), in the style of Frequently Asked Questions. We present the theoretical, computational and experimental aspects of network control, and discuss its current capabilities and limitations, together with the next likely advances and improvements. We further present the Python code to enable exploration of control principles in a manner specific to this prototypical organism.This article is part of a discussion meeting issue 'Connectome to behaviour: modelling C. elegans at cellular resolution'.
© 2018 The Author(s).

Entities:  

Keywords:  C. elegans; connectome; control theory; locomotion; network science

Mesh:

Year:  2018        PMID: 30201837      PMCID: PMC6158218          DOI: 10.1098/rstb.2017.0372

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  60 in total

Review 1.  C. elegans locomotion: small circuits, complex functions.

Authors:  Mei Zhen; Aravinthan D T Samuel
Journal:  Curr Opin Neurobiol       Date:  2015-04-04       Impact factor: 6.627

2.  The neural circuit for touch sensitivity in Caenorhabditis elegans.

Authors:  M Chalfie; J E Sulston; J G White; E Southgate; J N Thomson; S Brenner
Journal:  J Neurosci       Date:  1985-04       Impact factor: 6.167

3.  Virtual Cortical Resection Reveals Push-Pull Network Control Preceding Seizure Evolution.

Authors:  Ankit N Khambhati; Kathryn A Davis; Timothy H Lucas; Brian Litt; Danielle S Bassett
Journal:  Neuron       Date:  2016-08-25       Impact factor: 17.173

Review 4.  The whole worm: brain-body-environment models of C. elegans.

Authors:  Eduardo J Izquierdo; Randall D Beer
Journal:  Curr Opin Neurobiol       Date:  2016-06-20       Impact factor: 6.627

5.  A stochastic neuronal model predicts random search behaviors at multiple spatial scales in C. elegans.

Authors:  Steven B Augustine; Kristy J Lawton; Theodore H Lindsay; Tod R Thiele; William M Roberts; Eduardo J Izquierdo; Serge Faumont; Rebecca A Lindsay; Matthew Cale Britton; Navin Pokala; Cornelia I Bargmann; Shawn R Lockery
Journal:  Elife       Date:  2016-01-29       Impact factor: 8.140

6.  Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.

Authors:  Saul Kato; Harris S Kaplan; Tina Schrödel; Susanne Skora; Theodore H Lindsay; Eviatar Yemini; Shawn Lockery; Manuel Zimmer
Journal:  Cell       Date:  2015-10-17       Impact factor: 41.582

7.  Control centrality and hierarchical structure in complex networks.

Authors:  Yang-Yu Liu; Jean-Jacques Slotine; Albert-László Barabási
Journal:  PLoS One       Date:  2012-09-27       Impact factor: 3.240

8.  Target control of complex networks.

Authors:  Jianxi Gao; Yang-Yu Liu; Raissa M D'Souza; Albert-László Barabási
Journal:  Nat Commun       Date:  2014-11-12       Impact factor: 14.919

9.  Dimensionality and dynamics in the behavior of C. elegans.

Authors:  Greg J Stephens; Bethany Johnson-Kerner; William Bialek; William S Ryu
Journal:  PLoS Comput Biol       Date:  2008-04-25       Impact factor: 4.475

10.  Aversive Behavior in the Nematode C. elegans Is Modulated by cGMP and a Neuronal Gap Junction Network.

Authors:  Michelle C Krzyzanowski; Sarah Woldemariam; Jordan F Wood; Aditi H Chaubey; Chantal Brueggemann; Alexander Bowitch; Mary Bethke; Noelle D L'Etoile; Denise M Ferkey
Journal:  PLoS Genet       Date:  2016-07-26       Impact factor: 5.917

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  5 in total

1.  A practical guide to methodological considerations in the controllability of structural brain networks.

Authors:  Teresa M Karrer; Jason Z Kim; Jennifer Stiso; Ari E Kahn; Fabio Pasqualetti; Ute Habel; Danielle S Bassett
Journal:  J Neural Eng       Date:  2020-04-09       Impact factor: 5.379

2.  Connectome to behaviour: modelling Caenorhabditis elegans at cellular resolution.

Authors:  Stephen D Larson; Padraig Gleeson; André E X Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-09-10       Impact factor: 6.671

3.  Models of communication and control for brain networks: distinctions, convergence, and future outlook.

Authors:  Pragya Srivastava; Erfan Nozari; Jason Z Kim; Harang Ju; Dale Zhou; Cassiano Becker; Fabio Pasqualetti; George J Pappas; Danielle S Bassett
Journal:  Netw Neurosci       Date:  2020-11-01

4.  Path-dependent connectivity, not modularity, consistently predicts controllability of structural brain networks.

Authors:  Shubhankar P Patankar; Jason Z Kim; Fabio Pasqualetti; Danielle S Bassett
Journal:  Netw Neurosci       Date:  2020-11-01

Review 5.  Modeling brain, symptom, and behavior in the winds of change.

Authors:  David M Lydon-Staley; Eli J Cornblath; Ann Sizemore Blevins; Danielle S Bassett
Journal:  Neuropsychopharmacology       Date:  2020-08-28       Impact factor: 8.294

  5 in total

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