Literature DB >> 30201721

Intermediate step of cohesin's ATPase cycle allows cohesin to entrap DNA.

Gamze Ö Çamdere1, Kristian K Carlborg1, Douglas Koshland2.   

Abstract

Cohesin is a four-subunit ATPase in the family of structural maintenance of chromosomes (SMC). Cohesin promotes sister chromatid cohesion, chromosome condensation, DNA repair, and transcription regulation. Cohesin performs these functions as a DNA tether and potentially a DNA-based motor. At least one of its DNA binding activities involves entrapment of DNA within a lumen formed by its subunits. This activity can be reconstituted in vitro by incubating cohesin with DNA, ATP, and cohesin loader. Previously we showed that a mutant form of cohesin (DE-cohesin) possesses the ability to bind and tether DNA in vivo. Using in vitro reconstitution assays, we show that DE-cohesin can form stable complexes with DNA without ATP hydrolysis. We show that wild-type cohesin with ADP aluminum fluoride (cohesinADP/AlFx) can also form stable cohesin-DNA complexes. These results suggest that an intermediate nucleotide state of cohesin, likely cohesinADP-Pi, is capable of initially dissociating one interface between cohesin subunits to allow DNA entry into a cohesin lumen and subsequently interacting with the bound DNA to stabilize DNA entrapment. We also show that cohesinADP/AlFx binding to DNA is enhanced by cohesin loader, suggesting a function for loader other than stimulating the ATPase. Finally, we show that loader remains stably bound to cohesinADP/AlFx after DNA entrapment, potentially revealing a function for loader in tethering the second DNA substrate. These results provide important clues on how SMC complexes like cohesin can function as both DNA tethers and motors.

Entities:  

Keywords:  ATP binding cassette ATPase; DNA binding; SMC; cohesin; cohesion

Mesh:

Substances:

Year:  2018        PMID: 30201721      PMCID: PMC6166799          DOI: 10.1073/pnas.1807213115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Structure and stability of cohesin's Smc1-kleisin interaction.

Authors:  Christian H Haering; Doris Schoffnegger; Tatsuya Nishino; Wolfgang Helmhart; Kim Nasmyth; Jan Löwe
Journal:  Mol Cell       Date:  2004-09-24       Impact factor: 17.970

2.  Genetic evidence that the acetylation of the Smc3p subunit of cohesin modulates its ATP-bound state to promote cohesion establishment in Saccharomyces cerevisiae.

Authors:  Jill M Heidinger-Pauli; Itay Onn; Douglas Koshland
Journal:  Genetics       Date:  2010-05-24       Impact factor: 4.562

3.  Formation of a transition-state analog of the Ras GTPase reaction by Ras-GDP, tetrafluoroaluminate, and GTPase-activating proteins.

Authors:  R Mittal; M R Ahmadian; R S Goody; A Wittinghofer
Journal:  Science       Date:  1996-07-05       Impact factor: 47.728

Review 4.  Cohesin: its roles and mechanisms.

Authors:  Kim Nasmyth; Christian H Haering
Journal:  Annu Rev Genet       Date:  2009       Impact factor: 16.830

5.  A screen for cohesion mutants uncovers Ssl3, the fission yeast counterpart of the cohesin loading factor Scc4.

Authors:  Pascal Bernard; Julie Drogat; Jean-François Maure; Sonia Dheur; Sabine Vaur; Sylvie Genier; Jean-Paul Javerzat
Journal:  Curr Biol       Date:  2006-05-09       Impact factor: 10.834

6.  Structural mechanism of ATP-dependent DNA binding and DNA end bridging by eukaryotic Rad50.

Authors:  Florian Ulrich Seifert; Katja Lammens; Gabriele Stoehr; Brigitte Kessler; Karl-Peter Hopfner
Journal:  EMBO J       Date:  2016-02-19       Impact factor: 11.598

7.  ATP hydrolysis is required for cohesin's association with chromosomes.

Authors:  Prakash Arumugam; Stephan Gruber; Koichi Tanaka; Christian H Haering; Karl Mechtler; Kim Nasmyth
Journal:  Curr Biol       Date:  2003-11-11       Impact factor: 10.834

8.  Molecular basis for SMC rod formation and its dissolution upon DNA binding.

Authors:  Young-Min Soh; Frank Bürmann; Ho-Chul Shin; Takashi Oda; Kyeong Sik Jin; Christopher P Toseland; Cheolhee Kim; Hansol Lee; Soo Jin Kim; Min-Seok Kong; Marie-Laure Durand-Diebold; Yeon-Gil Kim; Ho Min Kim; Nam Ki Lee; Mamoru Sato; Byung-Ha Oh; Stephan Gruber
Journal:  Mol Cell       Date:  2014-12-31       Impact factor: 17.970

9.  Scc2/Nipbl hops between chromosomal cohesin rings after loading.

Authors:  James Rhodes; Davide Mazza; Kim Nasmyth; Stephan Uphoff
Journal:  Elife       Date:  2017-09-15       Impact factor: 8.140

10.  ROCC, a conserved region in cohesin's Mcd1 subunit, is essential for the proper regulation of the maintenance of cohesion and establishment of condensation.

Authors:  Thomas Eng; Vincent Guacci; Doug Koshland
Journal:  Mol Biol Cell       Date:  2014-06-25       Impact factor: 4.138

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  5 in total

1.  Sister DNA Entrapment between Juxtaposed Smc Heads and Kleisin of the Cohesin Complex.

Authors:  Christophe Chapard; Robert Jones; Till van Oepen; Johanna C Scheinost; Kim Nasmyth
Journal:  Mol Cell       Date:  2019-06-11       Impact factor: 17.970

2.  A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules.

Authors:  Pilar Gutierrez-Escribano; Matthew D Newton; Aida Llauró; Jonas Huber; Loredana Tanasie; Joseph Davy; Isabel Aly; Ricardo Aramayo; Alex Montoya; Holger Kramer; Johannes Stigler; David S Rueda; Luis Aragon
Journal:  Sci Adv       Date:  2019-11-27       Impact factor: 14.136

3.  Cohesin architecture and clustering in vivo.

Authors:  Siheng Xiang; Douglas Koshland
Journal:  Elife       Date:  2021-02-17       Impact factor: 8.140

4.  Topological in vitro loading of the budding yeast cohesin ring onto DNA.

Authors:  Masashi Minamino; Torahiko L Higashi; Céline Bouchoux; Frank Uhlmann
Journal:  Life Sci Alliance       Date:  2018-10-26

5.  A Structure-Based Mechanism for DNA Entry into the Cohesin Ring.

Authors:  Torahiko L Higashi; Patrik Eickhoff; Joana S Sousa; Julia Locke; Andrea Nans; Helen R Flynn; Ambrosius P Snijders; George Papageorgiou; Nicola O'Reilly; Zhuo A Chen; Francis J O'Reilly; Juri Rappsilber; Alessandro Costa; Frank Uhlmann
Journal:  Mol Cell       Date:  2020-08-04       Impact factor: 17.970

  5 in total

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