Literature DB >> 30196099

Integrated analysis of in vitro data and the adverse outcome pathway framework for prioritization and regulatory applications: An exploratory case study using publicly available data on piperonyl butoxide and liver models.

Noffisat O Oki1, Lucian Farcal2, Ahmed Abdelaziz3, Oana Florean4, Tatyana Y Doktorova5, Thomas Exner6, Pekka Kohonen7, Roland Grafström8, Barry Hardy9.   

Abstract

The integration of existing knowledge to support the risk assessment of chemicals is an ongoing challenge for scientists, risk assessors and risk managers. In addition, European Union regulations limiting the use of new animal testing in cosmetics makes already existing information even more valuable. Applying a previous SEURAT-1 program framework to derive predictions of in vivo toxicity responses for a compound, we selected piperonyl butoxide (PBO) as a case study for identification of knowledge and methodology gaps in understanding a compound's effects on the human liver. This is investigated through integration of data from human in vitro transcriptomics studies, biological pathway analysis, chemical and disease associations, and adverse outcome pathway (AOP) information. The outcomes of the analysis are used to generate AOPs of liver-related endpoints, identifying areas of concern for risk assessors and regulators. We demonstrate that integration of data through already existing and publicly available tools can produce outcomes comparable to those that may be found through more conventional time- and resource-intensive methods. It is also expected that, with more refinement, this approach could in the future provide evidence to support chemical risk assessment, while also identifying data gaps for which additional testing may be needed.
Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Adverse outcome pathways; Transcriptomics; in silico methods; in vitro data

Mesh:

Substances:

Year:  2018        PMID: 30196099     DOI: 10.1016/j.tiv.2018.09.002

Source DB:  PubMed          Journal:  Toxicol In Vitro        ISSN: 0887-2333            Impact factor:   3.500


  4 in total

1.  Public data sources to support systems toxicology applications.

Authors:  Allan Peter Davis; Jolene Wiegers; Thomas C Wiegers; Carolyn J Mattingly
Journal:  Curr Opin Toxicol       Date:  2019-03-11

2.  Adverse Outcome Pathways as Versatile Tools in Liver Toxicity Testing.

Authors:  Emma Arnesdotter; Eva Gijbels; Bruna Dos Santos Rodrigues; Vânia Vilas-Boas; Mathieu Vinken
Journal:  Methods Mol Biol       Date:  2022

Review 3.  In silico toxicology: From structure-activity relationships towards deep learning and adverse outcome pathways.

Authors:  Jennifer Hemmerich; Gerhard F Ecker
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2020-03-31

4.  Combining Pharmacokinetics and Vibrational Spectroscopy: MCR-ALS Hard-and-Soft Modelling of Drug Uptake In Vitro Using Tailored Kinetic Constraints.

Authors:  David Pérez-Guaita; Guillermo Quintás; Zeineb Farhane; Romá Tauler; Hugh J Byrne
Journal:  Cells       Date:  2022-05-05       Impact factor: 7.666

  4 in total

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