| Literature DB >> 30195774 |
Tian Tian1, Meng Wang1, Shuai Lin1, Yan Guo2, Zhiming Dai3, Kang Liu1, Pengtao Yang1, Cong Dai1, Yuyao Zhu1, Yi Zheng1, Peng Xu1, Wenge Zhu4, Zhijun Dai5.
Abstract
Dysregulation of multiple long non-coding RNAs (lncRNAs) was reported to play major roles in breast cancer (BC). Here we aimed to collect most of the relevant literature to assess the prognostic value of lncRNAs in BC. To this end, we systematically searched PubMed, Embase, Web of Science, Chinese National Knowledge Infrastructure (CNKI), and Wanfang to identify published articles on the associations of lncRNAs with clinicopathology and/or survival of BC. Via this searching, we identified 70 articles involving 9,307 BC patients and regarding 48 lncRNAs. The expression of 41 lncRNAs was related to one or more clinicopathological parameters of BC, including tumor size; lymph node metastasis; histological grade; TNM stage; and estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER-2) statuses (p < 0.05). Dysregulation of 28 lncRNAs was associated with overall survival, and abnormal expression of 9 lncRNAs was linked to disease-free survival. Furthermore, the expression level of 3 lncRNAs was correlated with metastasis-free survival, 3 lncRNAs with relapse-free survival, and 3 lncRNAs with progression-free survival. Our analysis showed that multiple lncRNAs were significantly associated with BC clinicopathology and survival. A large-scale study is needed to verify the prognostic value of these lncRNAs in BC.Entities:
Keywords: breast cancer; clinicopathology; long non-coding RNA; prognosis; survival
Year: 2018 PMID: 30195774 PMCID: PMC6037885 DOI: 10.1016/j.omtn.2018.05.018
Source DB: PubMed Journal: Mol Ther Nucleic Acids ISSN: 2162-2531 Impact factor: 8.886
Characteristics of Studies Included in the Meta-analysis
| lncRNAs | Reference | Country | Race | Number of Patients | Expression in Tumor | Method | Sample Type | Cutoff | Survival | Follow-up (Month) | Quality Score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MALAT1 | China | Asian | 43 | upregulated | qRT-PCR | tissue | median | OS | 60 | 7 | |
| China | Asian | 118 | upregulated | qRT-PCR | tissue | NR | OS | 50 | 7 | ||
| France | Caucasian | 446 | upregulated | qRT-PCR | tissue | 3.02-fold | NR | NR | 7 | ||
| China | Asian | 139 | upregulated | qRT-PCR | tissue | median | OS | 55 | 7 | ||
| China | Asian | 204 | upregulated | qRT-PCR | tissue | 75% expression | RFS | 65 | 8 | ||
| China | Asian | 135 | downregulated | qRT-PCR | tissue | NR | NR | NR | 6 | ||
| China | Asian | 78 | upregulated | qRT-PCR | tissue | median | DFS | 60 | 8 | ||
| China | Asian | 86 | upregulated | qRT-PCR | tissue and serum | median | OS | NR | 5 | ||
| CCAT2 | China | Asian | 120 | upregulated | qRT-PCR | tissue | NR | OS | 90 | 6 | |
| Iran | Caucasian | 48 | normal | qRT-PCR | tissue | median | NR | NR | 6 | ||
| Netherlands | Caucasian | 747 | upregulated | qRT-PCR | tissue | quartile | OS, MFS | >120 | 7 | ||
| China | Asian | 67 | upregulated | qRT-PCR | tissue | 8-fold | OS | 60 | 7 | ||
| Germany | Caucasian | 129 | NR | qRT-PCR | tissue | median | MFS | 120 | 8 | ||
| HOTAIR | America | Caucasian | 132 | upregulated | qRT-PCR | tissue | 125-fold | OS, MFS | 180 | 8 | |
| Denmark | Caucasian | 488 | NR | microarray | tissue | median | MFS | 217 | 7 | ||
| Italy | Caucasian | 336 | NR | qRT-PCR | tissue | mean | OS, RFS | 86 | 8 | ||
| China | Asian | 30 | NR | qRT-PCR | tissue | median | OS | 40 | 5 | ||
| America | Caucasian | 94 | NR | ISH | tissue | median | NR | NR | 6 | ||
| China | Asian | 112 | upregulated | qRT-PCR | serum | median | DFS | 48 | 7 | ||
| MEG3 | China | Asian | 90 | downregulated | qRT-PCR | tissue | NR | OS, DFS | 80 | 6 | |
| China | Asian | 207 | downregulated | qRT-PCR | tissue | median | OS, PFS | 60 | 8 | ||
| China | Asian | 257 | downregulated | qRT-PCR | tissue | ΔCt = 8.065 | OS, RFS | 60 | 8 | ||
| TUSC7 | China | Asian | 31 | downregulated | qRT-PCR | tissue | mean | NR | NR | 6 | |
| China | Asian | 42 | downregulated | qRT-PCR | tissue | median | NR | NR | 6 | ||
| BCAR4 | Germany | Caucasian | 96 | NR | qRT-PCR | tissue | NR | NR | NR | 6 | |
| Netherlands | Caucasian | 786 | NR | qRT-PCR | tissue | detection limit | OS, PFS, MFS | 97 | 8 | ||
| TP73-AS1 | China | Asian | 86 | upregulated | qRT-PCR | tissue | median | NR | NR | 8 | |
| China | Asian | 36 | upregulated | qRT-PCR | tissue | median | OS | 48 | 8 | ||
| NEAT1 | China | Asian | 118 | upregulated | qRT-PCR | tissue | NR | OS | 60 | 6 | |
| China | Asian | 70 | upregulated | qRT-PCR | tissue | NR | OS | 60 | 6 | ||
| China | Asian | 40 | upregulated | qRT-PCR | tissue | 2-fold | OS | 24 | 6 | ||
| TUG1 | China | Asian | 100 | upregulated | qRT-PCR | tissue | mean | NR | NR | 7 | |
| China | Asian | 58 | downregulated | qRT-PCR | tissue | mean | NR | NR | 6 | ||
| CRNDE | China | Asian | 103 | upregulated | qRT-PCR | tissue | NR | OS | NR | 6 | |
| China | Asian | 76 | upregulated | qRT-PCR | tissue& serum | 2-ΔΔCt = 1 | NR | NR | 6 |
OS, overall survival; DFS, disease-free survival; MFS, metastasis-free survival; RFS, relapse- free survival; PFS, progression-free survival; NR, not report; ISH, in situ hybridization.
Figure 1Forest Plots of the Significant Associations between the Expression of Five lncRNAs and Clinical Features of Breast Cancer
Each square indicates a study, and the area of squares is proportional to the weight of the study. The diamond represents the pooled OR and 95% CI.
Summary of lncRNAs Related to Clinicopathological Features of Breast Cancer
| Clinicopathological Feature | lncRNA |
|---|---|
| Tumor size | SNHG12, HOTTIP, H19, CRNDE, SPRY4-IT1, FGF14-AS2, APOC1P1-3, EGOT, 91H, HOXA-AS2, PVT1, CRALA, SNHG15, SUMO1P3, ARA |
| LN metastasis | NEAT1, SNHG12, HOTTIP, CCAT1, AFAP1-AS1, Z38, TUNAR, FGF14-AS2, HULC, EGOT, 91H, HIF1A-AS2, UCA1, linc-ROR, HOXA-AS2, GAS6-AS1, linc-ITGB1, DANCR, PVT1, OR3A4, CRALA, FENDRR, SNHG15, SUMO1P3 |
| Histological grade | MEG3, CCAT1, TUNAR, EPB41L4A-AS2, HULC, BC040587, GAS6-AS1, DANCR, OR3A4 |
| TNM stage | TP73-AS1, NEAT1, HOTTIP, CCAT1, AFAP1-AS1, ACTA2-AS1, Z38, SPRY4-IT1, FGF14-AS2, EPB41L4A-AS2, HULC, HOXA-AS2, linc-ITGB1, DANCR, PVT1, OR3A4, CRALA, HOXB-AS5, LINP1, SNHG15, SUMO1P3 |
| ER status | BCAR4, H19, LINC00978, EPB41L4A-AS2, CRALA |
| PR status | MALAT1, H19, EPB41L4A-AS2, CRALA, FENDRR |
| HER-2 status | TUSC7, 91H, ANRASSF1, OR3A4, FENDRR |
LN, lymph node; ER, estrogen receptor; PR, progesterone receptor; HER-2, human epidermal growth factor receptor 2.
Figure 2Forest Plots of the Associations between the Expression of Five lncRNAs and Breast Cancer Overall Survival
Each square indicates a study and the area of squares is proportional to the weight of the study. The diamond represents the pooled HR and 95% CI.
Figure 3Forest Plots of the Associations between the Expression of Two lncRNAs and Breast Cancer Metastasis-free Survival
Each square indicates a study and the area of squares is proportional to the weight of the study. The diamond represents the pooled HR and 95% CI.
Figure 4Forest Plots of the Associations between the Expression of lncRNAs and Breast Cancer Overall Survival in Single Studies
Each square indicates a study.
Summary of Other Significant Associations of lncRNAs with Breast Cancer Survival
| Survival | lncRNA | HR and 95% CI | Analysis | Reference |
|---|---|---|---|---|
| DFS | MALAT1 | 2.36 (1.04–5.38) | univariate | |
| HOTTIP | 4.08 (1.13–14.71) | multivariate | ||
| MVIH | 2.55 (1.06–6.12) | multivariate | ||
| LINC00978 | 2.27 (1.24–4.16) | multivariate | ||
| linc-ITGB1 | 3.13 (1.89–6.14) | multivariate | ||
| MEG3 | 0.59 (0.36–0.96) | univariate | ||
| GAS6-AS1 | 0.28 (0.13—0.60) | multivariate | ||
| HOTAIR | 1.89 (1.15–3.11) | univariate | ||
| LINP1 | 8.40 (1.72–41.06) | univariate | ||
| RFS | MALAT1 | 2.02 (1.02–3.98) | multivariate | |
| MEG3 | 0.37 (0.15–0.87) | multivariate | ||
| HOTAIR | 0.47 (0.26–0.87) | multivariate | ||
| PFS | CCAT1 | 3.59 (2.00–7.84) | multivariate | |
| MEG3 | 0.37 (0.13–0.88) | multivariate | ||
| FENDRR | 0.578 (0.454–0.735) | multivariate | ||
| MFS | BCAR4 | 1.41 (1.03–1.94) | univariate |
DFS, disease-free survival; MFS, metastasis-free survival; RFS, relapse-free survival; PFS, progression-free survival.
Figure 5Flow Diagram of the Literature Review Process
A total of 991 articles were found by searching databases. After removing duplication, 732 articles were screened by title and abstract. Then, 111 articles were reviewed for full-text and 70 articles were finally included.