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Literature DB >> 30185592

The RNA Epitranscriptome of DNA Viruses.

Abstract

RNA modifications have generated much interest in the virology field, as recent works have shown that many viruses harbor these marks and modify cellular marks. The most abundant mRNA modification in eukaryotic cells, N 6-methyladenosine (m6A), has been examined extensively at the genome-wide scale in both cellular and viral contexts. This Gem discusses the role of m6A in gene regulation and describes recent advancements in Kaposi's sarcoma-associated herpesvirus (KSHV) and simian virus 40 (SV40) research. We provide insights into future research related to m6A in DNA viruses.

Entities: Chemical Gene Species

Keywords: 3′UTR hypermethylation; 5′UTR hypomethylation; KSHV; Kaposi's sarcoma-associated herpesvirus; N6,2′-O-dimethyladenosine; N6-methyladenosine; SV40; YTHDC1; YTHDF2; epitranscriptome; latency and lytic replication; m6A; m6Am; simian virus 40

Mesh：

Substances：

Year: 2018 PMID： 30185592 PMCID： PMC6206477 DOI： 10.1128/JVI.00696-18

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

96 in total

1. Methylated simian virus 40-specific RNA from nuclei and cytoplasm of infected BSC-1 cells.

Authors: S Lavi; A J Shatkin
Journal: Proc Natl Acad Sci U S A Date: 1975-06 Impact factor: 11.205

2. N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors: Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal: Cell Date: 2015-06-04 Impact factor: 41.582

3. Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain.

Authors: Shukun Luo; Liang Tong
Journal: Proc Natl Acad Sci U S A Date: 2014-09-08 Impact factor: 11.205

4. Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain.

Authors: Chao Xu; Xiao Wang; Ke Liu; Ian A Roundtree; Wolfram Tempel; Yanjun Li; Zhike Lu; Chuan He; Jinrong Min
Journal: Nat Chem Biol Date: 2014-09-21 Impact factor: 15.040

5. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors: Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal: Cell Date: 2012-05-17 Impact factor: 41.582

Review 6. T cell therapies for human polyomavirus diseases.

Authors: Sarah I Davies; Pawel Muranski
Journal: Cytotherapy Date: 2017-09-18 Impact factor: 5.414

7. YTHDF3 facilitates translation and decay of N⁶-methyladenosine-modified RNA.

Authors: Hailing Shi; Xiao Wang; Zhike Lu; Boxuan S Zhao; Honghui Ma; Phillip J Hsu; Chang Liu; Chuan He
Journal: Cell Res Date: 2017-01-20 Impact factor: 25.617

8. Kaposi's sarcoma-associated herpesvirus gene expression in endothelial (spindle) tumor cells.

Authors: K A Staskus; W Zhong; K Gebhard; B Herndier; H Wang; R Renne; J Beneke; J Pudney; D J Anderson; D Ganem; A T Haase
Journal: J Virol Date: 1997-01 Impact factor: 5.103

9. Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors: Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal: Nat Methods Date: 2015-06-29 Impact factor: 28.547

10. 5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m⁵C reader.

Authors: Xin Yang; Ying Yang; Bao-Fa Sun; Yu-Sheng Chen; Jia-Wei Xu; Wei-Yi Lai; Ang Li; Xing Wang; Devi Prasad Bhattarai; Wen Xiao; Hui-Ying Sun; Qin Zhu; Hai-Li Ma; Samir Adhikari; Min Sun; Ya-Juan Hao; Bing Zhang; Chun-Min Huang; Niu Huang; Gui-Bin Jiang; Yong-Liang Zhao; Hai-Lin Wang; Ying-Pu Sun; Yun-Gui Yang
Journal: Cell Res Date: 2017-04-18 Impact factor: 25.617

11 in total

1. NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination.

Authors: Stephan Werner; Aurellia Galliot; Florian Pichot; Thomas Kemmer; Virginie Marchand; Maksim V Sednev; Tina Lence; Jean-Yves Roignant; Julian König; Claudia Höbartner; Yuri Motorin; Andreas Hildebrandt; Mark Helm
Journal: Nucleic Acids Res Date: 2021-02-26 Impact factor: 16.971

2. N(6)-methyladenosine-binding protein YTHDF1 suppresses EBV replication and promotes EBV RNA decay.

Authors: Tian-Liang Xia; Xingyang Li; Xueping Wang; Yun-Jia Zhu; Hua Zhang; Weisheng Cheng; Mei-Ling Chen; Ying Ye; Yan Li; Ao Zhang; Dan-Ling Dai; Qian-Ying Zhu; Li Yuan; Jian Zheng; Huilin Huang; Si-Qi Chen; Zhi-Wen Xiao; Hong-Bo Wang; Gaurab Roy; Qian Zhong; Dongxin Lin; Yi-Xin Zeng; Jinkai Wang; Bo Zhao; Benjamin E Gewurz; Jianjun Chen; Zhixiang Zuo; Mu-Sheng Zeng
Journal: EMBO Rep Date: 2021-02-19 Impact factor: 8.807

Review 3. The role of N6-methyladenosine modification in the life cycle and disease pathogenesis of hepatitis B and C viruses.

Authors: Geon-Woo Kim; Aleem Siddiqui
Journal: Exp Mol Med Date: 2021-03-19 Impact factor: 8.718

Review 4. The Reversible Methylation of m6A Is Involved in Plant Virus Infection.

Authors: Jianying Yue; Yao Wei; Mingmin Zhao
Journal: Biology (Basel) Date: 2022-02-09

5. The m6A epitranscriptome opens a new charter in immune system logic.

Authors: Zhonghua Ma; Xiangyu Gao; You Shuai; Xiaofang Xing; Jiafu Ji
Journal: Epigenetics Date: 2020-10-19 Impact factor: 4.861

Review 6. Colocalization of m⁶A and G-Quadruplex-Forming Sequences in Viral RNA (HIV, Zika, Hepatitis B, and SV40) Suggests Topological Control of Adenosine N ⁶-Methylation.

Authors: Aaron M Fleming; Ngoc L B Nguyen; Cynthia J Burrows
Journal: ACS Cent Sci Date: 2019-02-04 Impact factor: 14.553

10. Methyltransferase-like 3 Modulates Severe Acute Respiratory Syndrome Coronavirus-2 RNA N6-Methyladenosine Modification and Replication.

Authors: Xueyan Zhang; Haojie Hao; Li Ma; Yecheng Zhang; Xiao Hu; Zhen Chen; Di Liu; Jianhui Yuan; Zhangli Hu; Wuxiang Guan
Journal: mBio Date: 2021-07-06 Impact factor: 7.867

The RNA Epitranscriptome of DNA Viruses.

1. Methylated simian virus 40-specific RNA from nuclei and cytoplasm of infected BSC-1 cells.

2. N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

3. Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain.

4. Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain.

5. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Review 6. T cell therapies for human polyomavirus diseases.

7. YTHDF3 facilitates translation and decay of N⁶-methyladenosine-modified RNA.

8. Kaposi's sarcoma-associated herpesvirus gene expression in endothelial (spindle) tumor cells.

9. Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

10. 5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m⁵C reader.

1. NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination.

2. N(6)-methyladenosine-binding protein YTHDF1 suppresses EBV replication and promotes EBV RNA decay.

Review 3. The role of N6-methyladenosine modification in the life cycle and disease pathogenesis of hepatitis B and C viruses.

Review 4. The Reversible Methylation of m6A Is Involved in Plant Virus Infection.

5. The m6A epitranscriptome opens a new charter in immune system logic.

Review 6. Colocalization of m⁶A and G-Quadruplex-Forming Sequences in Viral RNA (HIV, Zika, Hepatitis B, and SV40) Suggests Topological Control of Adenosine N ⁶-Methylation.

Review 7. It's the Little Things (in Viral RNA).

8. The m⁶A landscape of polyadenylated nuclear (PAN) RNA and its related methylome in the context of KSHV replication.

9. Caspases Switch off the m⁶A RNA Modification Pathway to Foster the Replication of a Ubiquitous Human Tumor Virus.

10. Methyltransferase-like 3 Modulates Severe Acute Respiratory Syndrome Coronavirus-2 RNA N6-Methyladenosine Modification and Replication.

Review 6. T cell therapies for human polyomavirus diseases.

Review 3. The role of N6-methyladenosine modification in the life cycle and disease pathogenesis of hepatitis B and C viruses.

Review 4. The Reversible Methylation of m6A Is Involved in Plant Virus Infection.

Review 6. Colocalization of m6A and G-Quadruplex-Forming Sequences in Viral RNA (HIV, Zika, Hepatitis B, and SV40) Suggests Topological Control of Adenosine N 6-Methylation.

Review 7. It's the Little Things (in Viral RNA).

Review 6. Colocalization of m⁶A and G-Quadruplex-Forming Sequences in Viral RNA (HIV, Zika, Hepatitis B, and SV40) Suggests Topological Control of Adenosine N ⁶-Methylation.