Literature DB >> 30174298

Structural basis of DNA lesion recognition for eukaryotic transcription-coupled nucleotide excision repair.

Wei Wang1, Jun Xu1, Jenny Chong2, Dong Wang3.   

Abstract

Eukaryotic transcription-coupled nucleotide excision repair (TC-NER) is a pathway that removes DNA lesions capable of blocking RNA polymerase II (Pol II) transcription from the template strand. This process is initiated by lesion-arrested Pol II and the recruitment of Cockayne Syndrome B protein (CSB). In this review, we will focus on the lesion recognition steps of eukaryotic TC-NER and summarize the recent research progress toward understanding the structural basis of Pol II-mediated lesion recognition and Pol II-CSB interactions. We will discuss the roles of CSB in both TC-NER initiation and transcription elongation. Finally, we propose an updated model of tripartite lesion recognition and verification for TC-NER in which CSB ensures Pol II-mediated recognition of DNA lesions for TC-NER.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cockayne syndrome; DNA damage; Lesion recognition; Nucleotide excision repair; RNA polymerase II; Transcription-coupled nucleotide excision repair; Transcriptional arrest

Mesh:

Substances:

Year:  2018        PMID: 30174298      PMCID: PMC6340766          DOI: 10.1016/j.dnarep.2018.08.006

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  138 in total

1.  Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.

Authors:  A L Gnatt; P Cramer; J Fu; D A Bushnell; R D Kornberg
Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

2.  Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

Authors:  Luis G Brieba; Brandt F Eichman; Robert J Kokoska; Sylvie Doublié; Tom A Kunkel; Tom Ellenberger
Journal:  EMBO J       Date:  2004-08-05       Impact factor: 11.598

Review 3.  Conserved RNA polymerase II initiation complex structure.

Authors:  Merle Hantsche; Patrick Cramer
Journal:  Curr Opin Struct Biol       Date:  2017-04-22       Impact factor: 6.809

Review 4.  What happens at the lesion does not stay at the lesion: Transcription-coupled nucleotide excision repair and the effects of DNA damage on transcription in cis and trans.

Authors:  Marit E Geijer; Jurgen A Marteijn
Journal:  DNA Repair (Amst)       Date:  2018-08-23

5.  DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.

Authors:  V A Bohr; C A Smith; D S Okumoto; P C Hanawalt
Journal:  Cell       Date:  1985-02       Impact factor: 41.582

6.  Transcription-coupled repair of UV damage in the halophilic archaea.

Authors:  Nicole Stantial; Jarrod Dumpe; Kathryn Pietrosimone; Felicia Baltazar; David J Crowley
Journal:  DNA Repair (Amst)       Date:  2016-04-06

7.  Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II.

Authors:  C P Selby; A Sancar
Journal:  J Biol Chem       Date:  1997-01-17       Impact factor: 5.157

8.  Irofulven cytotoxicity depends on transcription-coupled nucleotide excision repair and is correlated with XPG expression in solid tumor cells.

Authors:  Florence Koeppel; Virginie Poindessous; Vladimir Lazar; Eric Raymond; Alain Sarasin; Annette K Larsen
Journal:  Clin Cancer Res       Date:  2004-08-15       Impact factor: 12.531

9.  Molecular basis of transcriptional mutagenesis at 8-oxoguanine.

Authors:  Gerke E Damsma; Patrick Cramer
Journal:  J Biol Chem       Date:  2009-09-16       Impact factor: 5.157

10.  RETRACTED: Cockayne syndrome A and B proteins differentially regulate recruitment of chromatin remodeling and repair factors to stalled RNA polymerase II in vivo.

Authors:  Maria Fousteri; Wim Vermeulen; Albert A van Zeeland; Leon H F Mullenders
Journal:  Mol Cell       Date:  2006-08       Impact factor: 17.970

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  13 in total

Review 1.  Molecular basis for damage recognition and verification by XPC-RAD23B and TFIIH in nucleotide excision repair.

Authors:  Hong Mu; Nicholas E Geacintov; Suse Broyde; Jung-Eun Yeo; Orlando D Schärer
Journal:  DNA Repair (Amst)       Date:  2018-08-23

2.  Genomic analysis of Rad26 and Rad1-Rad10 reveals differences in their dependence on Mediator and RNA polymerase II.

Authors:  Diyavarshini Gopaul; Cyril Denby Wilkes; Arach Goldar; Nathalie Giordanengo Aiach; Marie-Bénédicte Barrault; Elizaveta Novikova; Julie Soutourina
Journal:  Genome Res       Date:  2022-06-23       Impact factor: 9.438

3.  The Paf1 complex is required for RNA polymerase II removal in response to DNA damage.

Authors:  Feilong Chen; Beibei Liu; Hao Zhou; Jiafu Long
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

4.  Effects of Tumor-Derived DNA on CXCL12-CXCR4 and CCL21-CCR7 Axes of Hepatocellular Carcinoma Cells and the Regulation of Sinomenine Hydrochloride.

Authors:  Conghuan Shen; Jianhua Li; Ruidong Li; Zhenyu Ma; Yifeng Tao; Quanbao Zhang; Zhengxin Wang
Journal:  Front Oncol       Date:  2022-07-04       Impact factor: 5.738

Review 5.  Polymerases and DNA Repair in Neurons: Implications in Neuronal Survival and Neurodegenerative Diseases.

Authors:  Xiaoling Li; Guanghui Cao; Xiaokang Liu; Tie-Shan Tang; Caixia Guo; Hongmei Liu
Journal:  Front Cell Neurosci       Date:  2022-06-30       Impact factor: 6.147

Review 6.  Transcription-coupled nucleotide excision repair: New insights revealed by genomic approaches.

Authors:  Mingrui Duan; Rachel M Speer; Jenna Ulibarri; Ke Jian Liu; Peng Mao
Journal:  DNA Repair (Amst)       Date:  2021-04-20

7.  RNA polymerase II trapped on a molecular treadmill: Structural basis of persistent transcriptional arrest by a minor groove DNA binder.

Authors:  Juntaek Oh; Tiezheng Jia; Jun Xu; Jenny Chong; Peter B Dervan; Dong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-18       Impact factor: 11.205

Review 8.  XPA: DNA Repair Protein of Significant Clinical Importance.

Authors:  Lucia Borszéková Pulzová; Thomas A Ward; Miroslav Chovanec
Journal:  Int J Mol Sci       Date:  2020-03-22       Impact factor: 5.923

9.  Exploring new potential role of DDB2 by host cell reactivation assay in human tumorigenic cells.

Authors:  Elisabetta Bassi; Paola Perucca; Isabella Guardamagna; Ennio Prosperi; Lucia A Stivala; Ornella Cazzalini
Journal:  BMC Cancer       Date:  2019-10-29       Impact factor: 4.430

Review 10.  Formation and Recognition of UV-Induced DNA Damage within Genome Complexity.

Authors:  Philippe Johann To Berens; Jean Molinier
Journal:  Int J Mol Sci       Date:  2020-09-12       Impact factor: 5.923

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