Kai Li1,2, Marc Vaudel3,4, Bing Zhang5,6, Yan Ren1,2, Bo Wen5,6. 1. BGI-Shenzhen, Shenzhen, China. 2. China National GeneBank, BGI-Shenzhen, Shenzhen, China. 3. Department of Clinical Science, KG Jebsen Center for Diabetes Research, University of Bergen, Norway. 4. Center for Medical Genetics and Molecular Medicine, Haukeland University Hospital, Bergen, Norway. 5. Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA. 6. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Abstract
SUMMARY: Data visualization plays critical roles in proteomics studies, ranging from quality control of MS/MS data to validation of peptide identification results. Herein, we present PDV, an integrative proteomics data viewer that can be used to visualize a wide range of proteomics data, including database search results, de novo sequencing results, proteogenomics files, MS/MS data in mzML/mzXML format and data from public proteomics repositories. PDV is a lightweight visualization tool that enables intuitive and fast exploration of diverse, large-scale proteomics datasets on standard desktop computers in both graphical user interface and command line modes. AVAILABILITY AND IMPLEMENTATION: PDV software and the user manual are freely available at http://pdv.zhang-lab.org. The source code is available at https://github.com/wenbostar/PDV and is released under the GPL-3 license. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
SUMMARY: Data visualization plays critical roles in proteomics studies, ranging from quality control of MS/MS data to validation of peptide identification results. Herein, we present PDV, an integrative proteomics data viewer that can be used to visualize a wide range of proteomics data, including database search results, de novo sequencing results, proteogenomics files, MS/MS data in mzML/mzXML format and data from public proteomics repositories. PDV is a lightweight visualization tool that enables intuitive and fast exploration of diverse, large-scale proteomics datasets on standard desktop computers in both graphical user interface and command line modes. AVAILABILITY AND IMPLEMENTATION: PDV software and the user manual are freely available at http://pdv.zhang-lab.org. The source code is available at https://github.com/wenbostar/PDV and is released under the GPL-3 license. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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