Literature DB >> 30166706

CELL FATE DETERMINATION IN 3D: REGULATION OF GENE EXPRESSION VIA CHROMATIN INTERACTIONS WITH THE NUCLEAR MEMBRANE.

Jonathan A Epstein1.   

Abstract

In the nucleus of all cells, DNA is packaged in association with histone proteins to form chromatin. It is becoming increasingly clear that the organization of chromatin in three dimensions within the nucleus is highly regulated and can contribute to gene expression and cell function. The regions of the genome that are near the nuclear periphery are termed "lamin associated domains" or LADs (1-3). Here, I present a theory, based on recent results, for "chromatin competence" in which the organization of LADs in a progenitor cell accounts for the ability of that cell to respond to external factors to promote differentiation into one lineage or another. I propose that a cell can only respond to an inductive cue if the downstream genes are available for activation, and that genes are not available for activation if they are sequestered in LADs.

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Year:  2018        PMID: 30166706      PMCID: PMC6116621     

Source DB:  PubMed          Journal:  Trans Am Clin Climatol Assoc        ISSN: 0065-7778


  15 in total

1.  DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina.

Authors:  Joseph M Zullo; Ignacio A Demarco; Roger Piqué-Regi; Daniel J Gaffney; Charles B Epstein; Chauncey J Spooner; Teresa R Luperchio; Bradley E Bernstein; Jonathan K Pritchard; Karen L Reddy; Harinder Singh
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

2.  Tagged Chromosomal Insertion Site System: A Method to Study Lamina-Associated Chromatin.

Authors:  Jennifer C Harr; Karen L Reddy
Journal:  Methods Enzymol       Date:  2015-11-04       Impact factor: 1.600

3.  The nuclear-envelope protein and transcriptional repressor LAP2beta interacts with HDAC3 at the nuclear periphery, and induces histone H4 deacetylation.

Authors:  Raz Somech; Sigal Shaklai; Orit Geller; Ninette Amariglio; Amos J Simon; Gideon Rechavi; Einav Nili Gal-Yam
Journal:  J Cell Sci       Date:  2005-09-01       Impact factor: 5.285

4.  Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.

Authors:  Lars Guelen; Ludo Pagie; Emilie Brasset; Wouter Meuleman; Marius B Faza; Wendy Talhout; Bert H Eussen; Annelies de Klein; Lodewyk Wessels; Wouter de Laat; Bas van Steensel
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

5.  Chromatin profiling using targeted DNA adenine methyltransferase.

Authors:  B van Steensel; J Delrow; S Henikoff
Journal:  Nat Genet       Date:  2001-03       Impact factor: 38.330

6.  Genome-Nuclear Lamina Interactions Regulate Cardiac Stem Cell Lineage Restriction.

Authors:  Andrey Poleshko; Parisha P Shah; Mudit Gupta; Apoorva Babu; Michael P Morley; Lauren J Manderfield; Jamie L Ifkovits; Damelys Calderon; Haig Aghajanian; Javier E Sierra-Pagán; Zheng Sun; Qiaohong Wang; Li Li; Nicole C Dubois; Edward E Morrisey; Mitchell A Lazar; Cheryl L Smith; Jonathan A Epstein; Rajan Jain
Journal:  Cell       Date:  2017-10-12       Impact factor: 41.582

7.  Diet-induced lethality due to deletion of the Hdac3 gene in heart and skeletal muscle.

Authors:  Zheng Sun; Nikhil Singh; Shannon E Mullican; Logan J Everett; Li Li; Lijun Yuan; Xi Liu; Jonathan A Epstein; Mitchell A Lazar
Journal:  J Biol Chem       Date:  2011-08-01       Impact factor: 5.157

8.  Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation.

Authors:  Daan Peric-Hupkes; Wouter Meuleman; Ludo Pagie; Sophia W M Bruggeman; Irina Solovei; Wim Brugman; Stefan Gräf; Paul Flicek; Ron M Kerkhoven; Maarten van Lohuizen; Marcel Reinders; Lodewyk Wessels; Bas van Steensel
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

Review 9.  Spinning the web of cell fate.

Authors:  Kevin Van Bortle; Victor G Corces
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

10.  Developmentally regulated subnuclear genome reorganization restricts neural progenitor competence in Drosophila.

Authors:  Minoree Kohwi; Joshua R Lupton; Sen-Lin Lai; Michael R Miller; Chris Q Doe
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

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