Literature DB >> 30157641

A Single-Component Optogenetic System Allows Stringent Switch of Gene Expression in Yeast Cells.

Xiaopei Xu1, Zhaoxia Du1, Renmei Liu1, Ting Li1, Yuzheng Zhao1, Xianjun Chen1, Yi Yang1.   

Abstract

Light is a highly attractive actuator that allows spatiotemporal control of diverse cellular activities. In this study, we developed a single-component light-switchable gene expression system for yeast cells, termed yLightOn system. The yLightOn system is independent of exogenous cofactors, and exhibits more than a 500-fold ON/OFF ratio, extremely low leakage, fast expression kinetics, and high spatial resolution. We demonstrated the usefulness of the yLightOn system in regulating cell growth and cell cycle by stringently controlling the expression of His3 and ΔN Sic1 genes, respectively. Furthermore, we engineered a bidirectional expression module that allows the simultaneous control of the expression of two genes by light. With ClpX and ClpP as the reporters, the fast, quantitative, and spatially specific degradation of ssrA-tagged protein was observed. We suggest that this single-component optogenetic system will be immensely helpful in understanding cellular gene regulatory networks and in the design of robust genetic circuits for synthetic biology.

Entities:  

Keywords:  gene expression; optogenetic; protein stability; yeast

Mesh:

Substances:

Year:  2018        PMID: 30157641     DOI: 10.1021/acssynbio.8b00180

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  10 in total

1.  Optogenetic control of RNA function and metabolism using engineered light-switchable RNA-binding proteins.

Authors:  Renmei Liu; Jing Yang; Jing Yao; Zhou Zhao; Wei He; Ni Su; Zeyi Zhang; Chenxia Zhang; Zhuo Zhang; Haibo Cai; Linyong Zhu; Yuzheng Zhao; Shu Quan; Xianjun Chen; Yi Yang
Journal:  Nat Biotechnol       Date:  2022-01-03       Impact factor: 68.164

2.  A Single-Component Blue Light-Induced System Based on EL222 in Yarrowia lipolytica.

Authors:  Zhiqian Wang; Yunjun Yan; Houjin Zhang
Journal:  Int J Mol Sci       Date:  2022-06-06       Impact factor: 6.208

3.  A yeast optogenetic toolkit (yOTK) for gene expression control in Saccharomyces cerevisiae.

Authors:  Jidapas My An-Adirekkun; Cameron J Stewart; Stephanie H Geller; Michael T Patel; Justin Melendez; Benjamin L Oakes; Marcus B Noyes; Megan N McClean
Journal:  Biotechnol Bioeng       Date:  2019-12-18       Impact factor: 4.530

4.  Engineering AraC to make it responsive to light instead of arabinose.

Authors:  Edoardo Romano; Armin Baumschlager; Emir Bora Akmeriç; Navaneethan Palanisamy; Moustafa Houmani; Gregor Schmidt; Mehmet Ali Öztürk; Leonard Ernst; Mustafa Khammash; Barbara Di Ventura
Journal:  Nat Chem Biol       Date:  2021-04-26       Impact factor: 15.040

5.  A single-component light sensor system allows highly tunable and direct activation of gene expression in bacterial cells.

Authors:  Xie Li; Changcheng Zhang; Xiaopei Xu; Jun Miao; Jing Yao; Renmei Liu; Yuzheng Zhao; Xianjun Chen; Yi Yang
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

Review 6.  Emerging Species and Genome Editing Tools: Future Prospects in Cyanobacterial Synthetic Biology.

Authors:  Grant A R Gale; Alejandra A Schiavon Osorio; Lauren A Mills; Baojun Wang; David J Lea-Smith; Alistair J McCormick
Journal:  Microorganisms       Date:  2019-09-29

7.  A synthetic BRET-based optogenetic device for pulsatile transgene expression enabling glucose homeostasis in mice.

Authors:  Ting Li; Xianjun Chen; Yajie Qian; Jiawei Shao; Xie Li; Shuning Liu; Linyong Zhu; Yuzheng Zhao; Haifeng Ye; Yi Yang
Journal:  Nat Commun       Date:  2021-01-27       Impact factor: 14.919

Review 8.  Engineering of Synthetic Transcriptional Switches in Yeast.

Authors:  Masahiro Tominaga; Akihiko Kondo; Jun Ishii
Journal:  Life (Basel)       Date:  2022-04-08

Review 9.  Application of combinatorial optimization strategies in synthetic biology.

Authors:  Gita Naseri; Mattheos A G Koffas
Journal:  Nat Commun       Date:  2020-05-15       Impact factor: 14.919

Review 10.  Controlling gene expression with light: a multidisciplinary endeavour.

Authors:  Denis Hartmann; Jefferson M Smith; Giacomo Mazzotti; Razia Chowdhry; Michael J Booth
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

  10 in total

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