Literature DB >> 30143539

Ploidy and Size at Multiple Scales in the Arabidopsis Sepal.

Dana O Robinson1,2, Jeremy E Coate3, Abhyudai Singh4, Lilan Hong1,2, Max Bush5, Jeff J Doyle2,6, Adrienne H K Roeder7,2.   

Abstract

Ploidy and size phenomena are observed to be correlated across several biological scales, from subcellular to organismal. Two kinds of ploidy change can affect plants. Whole-genome multiplication increases ploidy in whole plants and is broadly associated with increases in cell and organism size. Endoreduplication increases ploidy in individual cells. Ploidy increase is strongly correlated with increased cell size and nuclear volume. Here, we investigate scaling relationships between ploidy and size by simultaneously quantifying nuclear size, cell size, and organ size in sepals from an isogenic series of diploid, tetraploid, and octoploid Arabidopsis thaliana plants, each of which contains an internal endopolyploidy series. We find that pavement cell size and transcriptome size increase linearly with whole-organism ploidy, but organ area increases more modestly due to a compensatory decrease in cell number. We observe that cell size and nuclear size are maintained at a constant ratio; the value of this constant is similar in diploid and tetraploid plants and slightly lower in octoploid plants. However, cell size is maintained in a mutant with reduced nuclear size, indicating that cell size is scaled to cell ploidy rather than to nuclear size. These results shed light on how size is regulated in plants and how cells and organisms of differing sizes are generated by ploidy change.
© 2018 American Society of Plant Biologists. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 30143539      PMCID: PMC6241276          DOI: 10.1105/tpc.18.00344

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  113 in total

Review 1.  Size control in plants--lessons from leaves and flowers.

Authors:  Hjördis Czesnick; Michael Lenhard
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-08-03       Impact factor: 10.005

Review 2.  The advantages and disadvantages of being polyploid.

Authors:  Luca Comai
Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

3.  The nucleotype, the natural karyotype and the ancestral genome.

Authors:  M D Bennett
Journal:  Symp Soc Exp Biol       Date:  1996

4.  Indispensable pre-mitotic endocycles promote aneuploidy in the Drosophila rectum.

Authors:  Kevin P Schoenfelder; Ruth A Montague; Sarah V Paramore; Ashley L Lennox; Anthony P Mahowald; Donald T Fox
Journal:  Development       Date:  2014-08-19       Impact factor: 6.868

5.  Spatial relationship between chromosomal domains in diploid and autotetraploid Arabidopsis thaliana nuclei.

Authors:  H Sas-Nowosielska; T Bernas
Journal:  Nucleus       Date:  2016-04-25       Impact factor: 4.197

6.  Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits: how the global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation.

Authors:  Julien Pirrello; Cynthia Deluche; Nathalie Frangne; Frédéric Gévaudant; Elie Maza; Anis Djari; Mickaël Bourge; Jean-Pierre Renaudin; Spencer Brown; Chris Bowler; Mohamed Zouine; Christian Chevalier; Nathalie Gonzalez
Journal:  Plant J       Date:  2018-01       Impact factor: 6.417

7.  Functional Conservation in the SIAMESE-RELATED Family of Cyclin-Dependent Kinase Inhibitors in Land Plants.

Authors:  Narender Kumar; Hirofumi Harashima; Shweta Kalve; Jonathan Bramsiepe; Kai Wang; Bulelani L Sizani; Laura L Bertrand; Matthew C Johnson; Christopher Faulk; Renee Dale; L Alice Simmons; Michelle L Churchman; Keiko Sugimoto; Naohiro Kato; Maheshi Dasanayake; Gerrit Beemster; Arp Schnittger; John C Larkin
Journal:  Plant Cell       Date:  2015-11-06       Impact factor: 11.277

Review 8.  Nuclear volume control by nucleoskeletal DNA, selection for cell volume and cell growth rate, and the solution of the DNA C-value paradox.

Authors:  T Cavalier-Smith
Journal:  J Cell Sci       Date:  1978-12       Impact factor: 5.285

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

10.  Homeostatic control of START through negative feedback between Cln3-Cdk1 and Rim15/Greatwall kinase in budding yeast.

Authors:  Nicolas Talarek; Elisabeth Gueydon; Etienne Schwob
Journal:  Elife       Date:  2017-06-10       Impact factor: 8.140

View more
  42 in total

Review 1.  The challenge of staying in shape: nuclear size matters.

Authors:  Pallavi Deolal; Gurranna Male; Krishnaveni Mishra
Journal:  Curr Genet       Date:  2021-03-29       Impact factor: 3.886

Review 2.  Organelle size scaling over embryonic development.

Authors:  Chase C Wesley; Sampada Mishra; Daniel L Levy
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-01-31       Impact factor: 5.814

3.  Quantitative imaging of RNA polymerase II activity in plants reveals the single-cell basis of tissue-wide transcriptional dynamics.

Authors:  Simon Alamos; Armando Reimer; Krishna K Niyogi; Hernan G Garcia
Journal:  Nat Plants       Date:  2021-08-09       Impact factor: 15.793

4.  Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana.

Authors:  Michael J Song; Barney I Potter; Jeff J Doyle; Jeremy E Coate
Journal:  Plant Cell       Date:  2020-03-17       Impact factor: 11.277

5.  Role of ploidy in colonization of alpine habitats in natural populations of Arabidopsis arenosa.

Authors:  Guillaume Wos; Jana Mořkovská; Magdalena Bohutínská; Gabriela Šrámková; Adam Knotek; Magdalena Lučanová; Stanislav Španiel; Karol Marhold; Filip Kolář
Journal:  Ann Bot       Date:  2019-09-24       Impact factor: 4.357

6.  Growth dynamics of the Arabidopsis fruit is mediated by cell expansion.

Authors:  Juan-José Ripoll; Mingyuan Zhu; Stephanie Brocke; Cindy T Hon; Martin F Yanofsky; Arezki Boudaoud; Adrienne H K Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-22       Impact factor: 11.205

7.  Monitoring single-cell bioluminescence of Arabidopsis leaves to quantitatively evaluate the efficiency of a transiently introduced CRISPR/Cas9 system targeting the circadian clock gene ELF3.

Authors:  Yuki Kanesaka; Masaaki Okada; Shogo Ito; Tokitaka Oyama
Journal:  Plant Biotechnol (Tokyo)       Date:  2019-09-25       Impact factor: 1.133

8.  For things to stay the same, things must change: polyploidy and pollen tube growth rates.

Authors:  Joseph H Williams; Paulo E Oliveira
Journal:  Ann Bot       Date:  2020-05-13       Impact factor: 4.357

Review 9.  Consequences of whole genome duplication for 2n pollen performance.

Authors:  Joseph H Williams
Journal:  Plant Reprod       Date:  2021-07-24       Impact factor: 3.767

10.  Maize centromeric chromatin scales with changes in genome size.

Authors:  Na Wang; Jianing Liu; William A Ricci; Jonathan I Gent; R Kelly Dawe
Journal:  Genetics       Date:  2021-04-15       Impact factor: 4.562

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.