Literature DB >> 30140791

Tensorial Spherical Polar Fourier Diffusion MRI with Optimal Dictionary Learning.

Jian Cheng1, Dinggang Shen2, Pew-Thian Yap2, Peter J Basser1.   

Abstract

High Angular Resolution Diffusion Imaging (HARDI) can characterize complex white matter micro-structure, avoiding the Gaussian diffusion assumption inherent in Diffusion Tensor Imaging (DTI). However, HARDI methods normally require significantly more signal measurements and a longer scan time than DTI, which limits its clinical utility. By considering sparsity of the diffusion signal, Compressed Sensing (CS) allows robust signal reconstruction from relatively fewer samples, reducing the scanning time. A good dictionary that sparsifies the signal is crucial for CS reconstruction. In this paper, we propose a novel method called Tensorial Spherical Polar Fourier Imaging (TSPFI) to recover continuous diffusion signal and diffusion propagator by representing the diffusion signal using an orthonormal TSPF basis. TSPFI is a generalization of the existing model-based method DTI and the model-free method SPFI. We also propose dictionary learning TSPFI (DL-TSPFI) to learn an even sparser dictionary represented as a linear combination of TSPF basis from continuous mixture of Gaussian signals. The learning process is efficiently performed in a small sub-space of SPF coefficients, and the learned dictionary is proved to be sparse for all mixture of Gaussian signals by adaptively setting the tensor in TSPF basis. Then the learned DL-TSPF dictionary is optimally and adaptively applied to different voxels using DTI and a weighted LASSO for CS reconstruction. DL-TSPFI is a generalization of DL-SPFI, by considering general adaptive tensor setting instead of a scale value. The experiments demonstrated that the learned DL-TSPF dictionary has a sparser representation and lower reconstruction Root-Mean-Squared-Error (RMSE) than both the original SPF basis and the DL-SPF dictionary.

Entities:  

Year:  2015        PMID: 30140791      PMCID: PMC6103216          DOI: 10.1007/978-3-319-24553-9_22

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  7 in total

1.  Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging.

Authors:  Van J Wedeen; Patric Hagmann; Wen-Yih Isaac Tseng; Timothy G Reese; Robert M Weisskoff
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

2.  Model-free and analytical EAP reconstruction via spherical polar Fourier diffusion MRI.

Authors:  Jian Cheng; Aurobrata Ghosh; Tianzi Jiang; Rachid Deriche
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

3.  Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT).

Authors:  Evren Ozarslan; Timothy M Shepherd; Baba C Vemuri; Stephen J Blackband; Thomas H Mareci
Journal:  Neuroimage       Date:  2006-03-20       Impact factor: 6.556

4.  Efficient and robust computation of PDF features from diffusion MR signal.

Authors:  Haz-Edine Assemlal; David Tschumperlé; Luc Brun
Journal:  Med Image Anal       Date:  2009-07-12       Impact factor: 8.545

5.  MR diffusion tensor spectroscopy and imaging.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

6.  Mean apparent propagator (MAP) MRI: a novel diffusion imaging method for mapping tissue microstructure.

Authors:  Evren Özarslan; Cheng Guan Koay; Timothy M Shepherd; Michal E Komlosh; M Okan İrfanoğlu; Carlo Pierpaoli; Peter J Basser
Journal:  Neuroimage       Date:  2013-04-13       Impact factor: 6.556

7.  Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries.

Authors:  Berkin Bilgic; Kawin Setsompop; Julien Cohen-Adad; Anastasia Yendiki; Lawrence L Wald; Elfar Adalsteinsson
Journal:  Magn Reson Med       Date:  2012-09-24       Impact factor: 4.668

  7 in total
  1 in total

1.  Single- and Multiple-Shell Uniform Sampling Schemes for Diffusion MRI Using Spherical Codes.

Authors:  Jian Cheng; Dinggang Shen; Pew-Thian Yap; Peter J Basser
Journal:  IEEE Trans Med Imaging       Date:  2017-09-25       Impact factor: 10.048

  1 in total

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