| Literature DB >> 30133189 |
Kathryn M Porter1, Tia L Kauffman2, Barbara A Koenig3, Katie L Lewis4, Heidi L Rehm5,6,7,8, Carolyn Sue Richards9, Natasha T Strande10, Holly K Tabor11, Susan M Wolf12, Yaping Yang13, Laura M Amendola14, Danielle R Azzariti8, Jonathan S Berg10, Katie Bergstrom15, Leslie G Biesecker4, Sawona Biswas16, Kevin M Bowling17, Wendy K Chung18,19, Ellen W Clayton20, Laura K Conlin21, Gregory M Cooper17, Matthew C Dulik21, Levi A Garraway22, Arezou A Ghazani5,6,23,24, Robert C Green5,6,7,25, Susan M Hiatt17, Seema M Jamal26, Gail P Jarvik14,27, Katrina A B Goddard2, Benjamin S Wilfond1,28.
Abstract
BACKGROUND: Clinical genome and exome sequencing (CGES) is primarily used to address specific clinical concerns by detecting risk of future disease, clarifying diagnosis, or directing treatment. Additionally, CGES makes possible the disclosure of autosomal recessive and X-linked carrier results as additional secondary findings, and research about the impact of carrier results disclosure in this context is needed.Entities:
Keywords: carrier testing; exome; genome; secondary findings; translational genomics research
Mesh:
Year: 2018 PMID: 30133189 PMCID: PMC6305639 DOI: 10.1002/mgg3.453
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Number of genes or conditions and timing of review for carrier status disclosure among CSER projects
| Project | Presequencing | Postsequencing |
|---|---|---|
| Dana‐Farber Cancer Institute | 3 (genes) | |
| HudsonAlpha | 3 (genes) | OMIM recessive disorders (conditions) |
| University of Washington | 10 (genes) | |
| Seattle Children's Hospital | 29 (genes) | |
| Kaiser Permanente Northwest | 668 (genes) | |
| Children's Hospital of Philadelphia | 186 (genes) | |
| Columbia University | OMIM recessive disorders (conditions) | |
| University of North Carolina, Chapel Hill | OMIM recessive disorders (conditions) | |
| Baylor College of Medicine | OMIM recessive disorders (conditions) | |
| National Human Genome Research Institute | 1508 (genes) | |
| Brigham and Women's Hospital | 4600 (genes) |
Always offers to disclose carrier status for three genes (CFTR, HBB, HEXA), but also performs trio sequencing so will offer to disclose carrier status for disease‐linked genes in OMIM when both mother and father are carriers.
Figure 1Disclosure of pathogenicity variant categories for carrier and secondary findings in CSER projects
Figure 2Participants with at least one positive carrier result disclosed in CSER projects. This figure includes the total number of conditions reviewed by each project as indicated in Table 1.
Most commonly disclosed genes for carrier status per CSER projecta
| Gene (condition) | Number of projects that list gene among the three most commonly disclosed | Number of projects that would disclose | Disease prevalence |
|---|---|---|---|
|
| 5 | 7 | 1/200–1/400 |
|
| 5 | 9 | 1/7,000 |
|
| 4 | 11 | 1/3,200 (Northern European Ancestry) |
|
| 4 | 8 | 1/60,000 |
|
| 4 | 8 | 1/50,00–1/7,000 |
|
| 2 | 11 | 1/300–1/500 (African American Ancestry) |
Genes reported by only one of the 11 CSER projects as most frequently disclosed include HEXA, ABCA4, CYP21A2, MUTYH, LRTOMT, F11, IDUA, ACADM, CD36, DUOX2, OTOF, ABCC6, C2, SACS, and SMPD1.
Four challenges to address in considering the use of CGES to ascertain and disclose carrier results in translational genomics research
| General challenges | Specific questions |
|---|---|
| Whether or not to offer to disclose carrier results |
What is the likely perceived utility of carrier results in this study population? |
| Selection of genes/conditions to disclose for carrier status |
What specific criteria will be used? |
| Participant choices |
Can participants choose whether or not to receive results? |
| Results disclosure process |
Will results be disclosed via in person meeting, phone, email/letter, or internet? |