Literature DB >> 30132673

Ultrafast Electron Attachment and Hole Transfer Following Ionizing Radiation of Aqueous Uridine Monophosphate.

Jun Ma1,2, Sergey A Denisov2, Jean-Louis Marignier2, Pascal Pernot2, Amitava Adhikary3, Shu Seki1, Mehran Mostafavi2.   

Abstract

The primary localization process of radiation-induced charges (holes (cation radical sites) and excess electrons) remains poorly understood, even at the level of monomeric DNA/RNA models, in particular, in an aqueous environment. We report the first spectroscopic study of charge transfer occurring in radiolysis of aqueous uridine 5'-monophosphate (UMP) solutions and its components: uridine, uracil, ribose, and phosphate. Our results show that prehydrated electrons effectively attach to the base site of UMP; the holes in UMP formed by either direct ionization or reaction of UMP with the radiation-mediated water cation radical (H2O•+) facilely localize on the ribose site, despite the fact that a part of them were initially created on either the phosphate or uracil. The nature of phosphate-to-sugar hole transfer is characterized as a barrierless intramolecular electron transfer with a time constant of 2.5 ns, while the base-to-sugar hole transfer occurs much faster, within a 5 ps electron pulse.

Entities:  

Year:  2018        PMID: 30132673      PMCID: PMC6126959          DOI: 10.1021/acs.jpclett.8b02170

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  21 in total

Review 1.  Complexity of damage produced by ionizing radiation.

Authors:  J F Ward
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2000

2.  Excess electrons in liquid water: First evidence of a prehydrated state with femtosecond lifetime.

Authors: 
Journal:  Phys Rev Lett       Date:  1987-04-13       Impact factor: 9.161

3.  Reactivity of the Strongest Oxidizing Species in Aqueous Solutions: The Short-Lived Radical Cation H2O(•.).

Authors:  Jun Ma; Uli Schmidhammer; Pascal Pernot; Mehran Mostafavi
Journal:  J Phys Chem Lett       Date:  2013-12-23       Impact factor: 6.475

4.  Correlation of free radical yields with strand break yields produced in plasmid DNA by the direct effect of ionizing radiation.

Authors:  Shubhadeep Purkayastha; Jamie R Milligan; William A Bernhard
Journal:  J Phys Chem B       Date:  2005-09-08       Impact factor: 2.991

5.  Formation of S-Cl phosphorothioate adduct radicals in dsDNA S-oligomers: hole transfer to guanine vs disulfide anion radical formation.

Authors:  Amitava Adhikary; Anil Kumar; Brian J Palmer; Andrew D Todd; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2013-08-14       Impact factor: 15.419

6.  Real-time measurement of the vertical binding energy during the birth of a solvated electron.

Authors:  Julia Stähler; Jan-Christoph Deinert; Daniel Wegkamp; Sebastian Hagen; Martin Wolf
Journal:  J Am Chem Soc       Date:  2015-01-30       Impact factor: 15.419

7.  A Theoretical and Mass Spectrometry Study of Dimethyl Methylphosphonate: New Isomers and Cation Decay Channels in an Intense Femtosecond Laser Field.

Authors:  G L Gutsev; Derrick Ampadu Boateng; P Jena; Katharine Moore Tibbetts
Journal:  J Phys Chem A       Date:  2017-10-31       Impact factor: 2.781

8.  Direct observation of the oxidation of DNA bases by phosphate radicals formed under radiation: a model of the backbone-to-base hole transfer.

Authors:  Jun Ma; Jean-Louis Marignier; Pascal Pernot; Chantal Houée-Levin; Anil Kumar; Michael D Sevilla; Amitava Adhikary; Mehran Mostafavi
Journal:  Phys Chem Chem Phys       Date:  2018-05-30       Impact factor: 3.676

9.  Sugar radicals in DNA: isolation of neutral radicals in gamma-irradiated DNA by hole and electron scavenging.

Authors:  Lata I Shukla; Robert Pazdro; David Becker; Michael D Sevilla
Journal:  Radiat Res       Date:  2005-05       Impact factor: 2.841

10.  One-electron oxidation of gemcitabine and analogs: mechanism of formation of C3' and C2' sugar radicals.

Authors:  Amitava Adhikary; Anil Kumar; Ramanjaneyulu Rayala; Ragda M Hindi; Ananya Adhikary; Stanislaw F Wnuk; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2014-10-23       Impact factor: 15.419

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  6 in total

1.  One Way Traffic: Base-to-Backbone Hole Transfer in Nucleoside Phosphorodithioate.

Authors:  Renata Kaczmarek; Samuel Ward; Dipra Debnath; Taisiya Jacobs; Alexander D Stark; Dariusz Korczyński; Anil Kumar; Michael D Sevilla; Sergey A Denisov; Viacheslav Shcherbakov; Pascal Pernot; Mehran Mostafavi; Roman Dembinski; Amitava Adhikary
Journal:  Chemistry       Date:  2020-06-09       Impact factor: 5.236

2.  Modulation of the Directionality of Hole Transfer between the Base and the Sugar-Phosphate Backbone in DNA with the Number of Sulfur Atoms in the Phosphate Group.

Authors:  Sergey A Denisov; Samuel Ward; Viacheslav Shcherbakov; Alexander D Stark; Renata Kaczmarek; Ewa Radzikowska-Cieciura; Dipra Debnath; Taisiya Jacobs; Anil Kumar; Michael D Sevilla; Pascal Pernot; Roman Dembinski; Mehran Mostafavi; Amitava Adhikary
Journal:  J Phys Chem B       Date:  2022-01-06       Impact factor: 2.991

3.  Quasi-Free Electron-Mediated Radiation Sensitization by C5-Halopyrimidines.

Authors:  Jun Ma; Teseer Bahry; Sergey A Denisov; Amitava Adhikary; Mehran Mostafavi
Journal:  J Phys Chem A       Date:  2021-09-02       Impact factor: 2.944

Review 4.  Ultrafast Processes Occurring in Radiolysis of Highly Concentrated Solutions of Nucleosides/Tides.

Authors:  Jun Ma; Sergey A Denisov; Amitava Adhikary; Mehran Mostafavi
Journal:  Int J Mol Sci       Date:  2019-10-08       Impact factor: 5.923

5.  [How can an electron induce oxidative damage in DNA in solution].

Authors:  Jun Ma; Sergey Denisov; Amitava Adhikary; Mehran Mostafavi
Journal:  Actual Chim       Date:  2020-04

6.  Probing Coherent Vibrations of Organic Phosphonate Radical Cations with Femtosecond Time-Resolved Mass Spectrometry.

Authors:  Derrick Ampadu Boateng; Mi'Kayla D Word; Katharine Moore Tibbetts
Journal:  Molecules       Date:  2019-01-31       Impact factor: 4.411

  6 in total

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