Literature DB >> 30132650

Discovery and Optimization of nTZDpa as an Antibiotic Effective Against Bacterial Persisters.

Wooseong Kim1, Andrew D Steele2, Wenpeng Zhu3, Erika E Csatary2, Nico Fricke3, Madeline M Dekarske2, Elamparithi Jayamani1, Wen Pan1, Bumsup Kwon4, Isabelle F Sinitsa5, Jake L Rosen2, Annie L Conery6,7, Beth Burgwyn Fuchs1, Petia M Vlahovska8, Frederick M Ausubel6,7, Huajian Gao3, William M Wuest2, Eleftherios Mylonakis1.   

Abstract

Conventional antibiotics are not effective in treating infections caused by drug-resistant or persistent nongrowing bacteria, creating a dire need for the development of new antibiotics. We report that the small molecule nTZDpa, previously characterized as a nonthiazolidinedione peroxisome proliferator-activated receptor gamma partial agonist, kills both growing and persistent Staphylococcus aureus cells by lipid bilayer disruption. S. aureus exhibited no detectable development of resistance to nTZDpa, and the compound acted synergistically with aminoglycosides. We improved both the potency and selectivity of nTZDpa against MRSA membranes compared to mammalian membranes by leveraging synthetic chemistry guided by molecular dynamics simulations. These studies provide key insights into the design of selective and potent membrane-active antibiotics effective against bacterial persisters.

Entities:  

Keywords:  MD simulations; MRSA; SAR; antibiotics; membrane-active agent; persisters

Mesh:

Substances:

Year:  2018        PMID: 30132650      PMCID: PMC6468991          DOI: 10.1021/acsinfecdis.8b00161

Source DB:  PubMed          Journal:  ACS Infect Dis        ISSN: 2373-8227            Impact factor:   5.084


  14 in total

Review 1.  Persister cells.

Authors:  Kim Lewis
Journal:  Annu Rev Microbiol       Date:  2010       Impact factor: 15.500

2.  High-throughput screening for novel anti-infectives using a C. elegans pathogenesis model.

Authors:  Annie L Conery; Jonah Larkins-Ford; Frederick M Ausubel; Natalia V Kirienko
Journal:  Curr Protoc Chem Biol       Date:  2014-03-14

Review 3.  Novel approaches to combat bacterial biofilms.

Authors:  Christophe Beloin; Stéphane Renard; Jean-Marc Ghigo; David Lebeaux
Journal:  Curr Opin Pharmacol       Date:  2014-09-23       Impact factor: 5.547

4.  A new class of synthetic retinoid antibiotics effective against bacterial persisters.

Authors:  Wooseong Kim; Wenpeng Zhu; Gabriel Lambert Hendricks; Daria Van Tyne; Andrew D Steele; Colleen E Keohane; Nico Fricke; Annie L Conery; Steven Shen; Wen Pan; Kiho Lee; Rajmohan Rajamuthiah; Beth Burgwyn Fuchs; Petia M Vlahovska; William M Wuest; Michael S Gilmore; Huajian Gao; Frederick M Ausubel; Eleftherios Mylonakis
Journal:  Nature       Date:  2018-03-28       Impact factor: 49.962

Review 5.  Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management.

Authors:  Steven Y C Tong; Joshua S Davis; Emily Eichenberger; Thomas L Holland; Vance G Fowler
Journal:  Clin Microbiol Rev       Date:  2015-07       Impact factor: 26.132

Review 6.  Waves of resistance: Staphylococcus aureus in the antibiotic era.

Authors:  Henry F Chambers; Frank R Deleo
Journal:  Nat Rev Microbiol       Date:  2009-09       Impact factor: 60.633

7.  Novel antibody-antibiotic conjugate eliminates intracellular S. aureus.

Authors:  Sophie M Lehar; Thomas Pillow; Min Xu; Leanna Staben; Kimberly K Kajihara; Richard Vandlen; Laura DePalatis; Helga Raab; Wouter L Hazenbos; J Hiroshi Morisaki; Janice Kim; Summer Park; Martine Darwish; Byoung-Chul Lee; Hilda Hernandez; Kelly M Loyet; Patrick Lupardus; Rina Fong; Donghong Yan; Cecile Chalouni; Elizabeth Luis; Yana Khalfin; Emile Plise; Jonathan Cheong; Joseph P Lyssikatos; Magnus Strandh; Klaus Koefoed; Peter S Andersen; John A Flygare; Man Wah Tan; Eric J Brown; Sanjeev Mariathasan
Journal:  Nature       Date:  2015-11-04       Impact factor: 49.962

8.  Graphene microsheets enter cells through spontaneous membrane penetration at edge asperities and corner sites.

Authors:  Yinfeng Li; Hongyan Yuan; Annette von dem Bussche; Megan Creighton; Robert H Hurt; Agnes B Kane; Huajian Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

9.  Metabolite-enabled eradication of bacterial persisters by aminoglycosides.

Authors:  Kyle R Allison; Mark P Brynildsen; James J Collins
Journal:  Nature       Date:  2011-05-12       Impact factor: 49.962

10.  Whole animal automated platform for drug discovery against multi-drug resistant Staphylococcus aureus.

Authors:  Rajmohan Rajamuthiah; Beth Burgwyn Fuchs; Elamparithi Jayamani; Younghoon Kim; Jonah Larkins-Ford; Annie Conery; Frederick M Ausubel; Eleftherios Mylonakis
Journal:  PLoS One       Date:  2014-02-19       Impact factor: 3.240

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  13 in total

1.  A selective membrane-targeting repurposed antibiotic with activity against persistent methicillin-resistant Staphylococcus aureus.

Authors:  Wooseong Kim; Guijin Zou; Taylor P A Hari; Ingrid K Wilt; Wenpeng Zhu; Nicolas Galle; Hammad A Faizi; Gabriel L Hendricks; Katerina Tori; Wen Pan; Xiaowen Huang; Andrew D Steele; Erika E Csatary; Madeline M Dekarske; Jake L Rosen; Noelly de Queiroz Ribeiro; Kiho Lee; Jenna Port; Beth Burgwyn Fuchs; Petia M Vlahovska; William M Wuest; Huajian Gao; Frederick M Ausubel; Eleftherios Mylonakis
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-29       Impact factor: 11.205

2.  Potent trifluoromethoxy, trifluoromethylsulfonyl, trifluoromethylthio and pentafluorosulfanyl containing (1,3,4-oxadiazol-2-yl)benzamides against drug-resistant Gram-positive bacteria.

Authors:  George A Naclerio; Nader S Abutaleb; Kenneth I Onyedibe; Mohamed N Seleem; Herman O Sintim
Journal:  RSC Med Chem       Date:  2019-12-16

3.  Hijacking the Bacterial Circuitry of Biofilm Processes via Chemical "Hot-Wiring": An Under-explored Avenue for Therapeutic Development.

Authors:  Ingrid K Wilt; Taylor P A Hari; William M Wuest
Journal:  ACS Infect Dis       Date:  2019-04-19       Impact factor: 5.084

Review 4.  Using membrane perturbing small molecules to target chronic persistent infections.

Authors:  Cassandra L Schrank; Ingrid K Wilt; Carlos Monteagudo Ortiz; Brittney A Haney; William M Wuest
Journal:  RSC Med Chem       Date:  2021-06-11

5.  nTZDpa (non-thiazolidinedione PPARγ partial agonist) derivatives retain antimicrobial activity without improving renal toxicity.

Authors:  Madeline M Dekarske; Lewis Oscar Felix; Carlos Monteagudo Ortiz; Erika E Csatary; Elefterios Mylonakis; William M Wuest
Journal:  Bioorg Med Chem Lett       Date:  2022-03-14       Impact factor: 2.940

Review 6.  In Vitro Studies of Persister Cells.

Authors:  Niilo Kaldalu; Vasili Hauryliuk; Kathryn Jane Turnbull; Agnese La Mensa; Marta Putrinš; Tanel Tenson
Journal:  Microbiol Mol Biol Rev       Date:  2020-11-11       Impact factor: 11.056

7.  A Bisphenolic Honokiol Analog Outcompetes Oral Antimicrobial Agent Cetylpyridinium Chloride via a Membrane-Associated Mechanism.

Authors:  Cristian Ochoa; Amy E Solinski; Marcus Nowlan; Madeline M Dekarske; William M Wuest; Marisa C Kozlowski
Journal:  ACS Infect Dis       Date:  2019-11-12       Impact factor: 5.084

8.  Synthesis of Chimeric Thiazolo-Nootkatone Derivatives as Potent Antimicrobial Agents.

Authors:  Ibrahim S Alkhaibari; Hansa Raj K C; Rawan Alnufaie; David Gilmore; Mohammad A Alam
Journal:  ChemMedChem       Date:  2021-06-09       Impact factor: 3.466

9.  4-4-(Anilinomethyl)-3-[4-(trifluoromethyl)phenyl]-1H-pyrazol-1-ylbenzoic acid derivatives as potent anti-gram-positive bacterial agents.

Authors:  Raj Kc Hansa; M M K Khan; M M Frangie; D F Gilmore; R S Shelton; A V Savenka; A G Basnakian; S L Shuttleworth; M S Smeltzer; M A Alam
Journal:  Eur J Med Chem       Date:  2021-04-04       Impact factor: 7.088

10.  The Neutrally Charged Diarylurea Compound PQ401 Kills Antibiotic-Resistant and Antibiotic-Tolerant Staphylococcus aureus.

Authors:  Wooseong Kim; Guijin Zou; Wen Pan; Nico Fricke; Hammad A Faizi; Soo Min Kim; Rajamohammed Khader; Silei Li; Kiho Lee; Iliana Escorba; Petia M Vlahovska; Huajian Gao; Frederick M Ausubel; Eleftherios Mylonakis
Journal:  mBio       Date:  2020-06-30       Impact factor: 7.867

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